Locus 5064

Sequence ID 3R_DroMel_CAF1
Location 13,351,433 – 13,351,534
Length 101
Max. P 0.919693
window8259

overview

Window 9

Location 13,351,433 – 13,351,534
Length 101
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 94.47
Mean single sequence MFE -30.80
Consensus MFE -28.14
Energy contribution -28.30
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.91
SVM decision value 1.13
SVM RNA-class probability 0.919693
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13351433 101 + 27905053
GCAGGAGAAAAAACGUGCCCCAUAAAAGGAGCACCGGAAAAGGGGAAACAGUGUGCUAGUUGGUGCUGGCCAUGUCUUCAAUCAGCGAAGCAGCUGGAGGG---
...(((((......((((.((......)).)))).........(....).(((.((((((....))))))))).)))))..(((((......)))))....--- ( -30.40)
>DroSec_CAF1 96247 100 + 1
GCAGGAGAAAAAACGUGCCCCAUAAAAGGAGCACCGGAA-AGGGGAAACAGUGUGCUAGUUGGUGCUGGCCAUGUCUUCAAUCAGCGGAGCAGCUGGAGGG---
...(((((......((((.((......)).)))).....-...(....).(((.((((((....))))))))).)))))..(((((......)))))....--- ( -30.40)
>DroSim_CAF1 101942 101 + 1
GCAGGAGAAAAAACGUGCCCCAUAAAAGGAGCACCGGAAAAGGGGAAACAGUGUGCUAGUUGGUGCUGGCCAUGUCUUCAAUCAGCGGAGCAGCUGGAGGU---
...(((((......((((.((......)).)))).........(....).(((.((((((....))))))))).)))))..(((((......)))))....--- ( -30.40)
>DroEre_CAF1 103920 104 + 1
GCAGGAGAAAAAACGUGCCCCAUAAAAGCAGCGGCGGAAAAGGGGAAACAGUGUGCUAGUUGGUGCUGGCCAUGUCUUCAAUCAGCGGAGCAGCUGGAGCAGAU
((.(((((......((.((((......((....))......))))..)).(((.((((((....))))))))).)))))..(((((......))))).)).... ( -33.00)
>DroYak_CAF1 113845 104 + 1
GCAGGAGAAAAAACGUGCCCCAUAAAAGCAGCACCGGAAAAGGGGAAACAGUGUGCUAGUUGGUGCUGGCCAUGUCUUCAAUCAACGGAGCAGCUGGAGGAGGU
................(((((.....(((.((.(((.....(((((....(((.((((((....))))))))).)))))......))).)).)))...)).))) ( -29.80)
>consensus
GCAGGAGAAAAAACGUGCCCCAUAAAAGGAGCACCGGAAAAGGGGAAACAGUGUGCUAGUUGGUGCUGGCCAUGUCUUCAAUCAGCGGAGCAGCUGGAGGA___
...(((((......((.((((......((....))......))))..)).(((.((((((....))))))))).)))))..(((((......)))))....... (-28.14 = -28.30 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:19 2006