Locus 5063

Sequence ID 3R_DroMel_CAF1
Location 13,344,212 – 13,344,304
Length 92
Max. P 0.859481
window8258

overview

Window 8

Location 13,344,212 – 13,344,304
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 77.89
Mean single sequence MFE -26.28
Consensus MFE -15.84
Energy contribution -15.12
Covariance contribution -0.72
Combinations/Pair 1.23
Mean z-score -1.88
Structure conservation index 0.60
SVM decision value 0.82
SVM RNA-class probability 0.859481
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13344212 92 - 27905053
CAGCCCCCUUGGCAAGGGGGUUAACUUAAGUCAACUACACAAAAGCCAUGUCAGCAGACGCUGACAGAACCGCCCCAAAGCCAAAGCCCGUC
........(((((...(((((.......((....))............(((((((....))))))).....)))))...)))))........ ( -26.60)
>DroPse_CAF1 104120 80 - 1
GGGGC----GGGUCUGAGGAUGAACUUAAGUCAACUACACAAAAGCCCUGUCAGUAGACGCUGACAGC-UCGCUUCG-------AGUCUGCC
..(((----(((..(((((.(((.....((....))...........((((((((....)))))))).-))))))))-------..)))))) ( -26.10)
>DroEre_CAF1 95562 85 - 1
CAGCCCCC-UGGCAAGGGGGUUAACUUAAGUCAACUACACAAAAGCCAUGUCAGCAGACGCUGACAGAGCCGCCCCAA------AGCCCGUC
.(((((((-(....))))))))......................((..(((((((....)))))))..)).((.....------.))..... ( -28.70)
>DroYak_CAF1 106958 85 - 1
CAGCCCCC-UGGCAAGGGGGUUAACUUAAGUCAACUACACAAAAGCCAUGUCAGCAGACGCUGACAGAACAGCCCCAA------AGCCCGUC
.(((((((-(....))))))))......................((..(((((((....))))))).....)).....------........ ( -26.00)
>DroAna_CAF1 108340 83 - 1
CACUCGCCUAG--AGGGGGGUUAACUUGAGUCAACUACACAAAAGCCAUGUCAGCAGACGCUGACAGC-CCGCCCCGA------AGCUUGGC
.....(((.((--.((((((((....((((....)).))....)))).(((((((....)))))))..-...))))..------..)).))) ( -28.00)
>DroPer_CAF1 98263 80 - 1
GAGGC----GGGUCUGAGGAUGAACUUAAGUCAACUACACAAAAGCCCUGCCAGUAGACGCUGACAGC-UCGCUUCG-------AGUCUGCC
..(((----(((.(((((......))).((....)).......)).)))))).((((((..(((.((.-...)))))-------.)))))). ( -22.30)
>consensus
CAGCCCCC_UGGCAAGGGGGUUAACUUAAGUCAACUACACAAAAGCCAUGUCAGCAGACGCUGACAGA_CCGCCCCAA______AGCCCGUC
...............((((.........((....))............(((((((....)))))))......))))................ (-15.84 = -15.12 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:18 2006