Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,334,733 – 13,334,914 |
Length | 181 |
Max. P | 0.929613 |
Location | 13,334,733 – 13,334,824 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 91.48 |
Mean single sequence MFE | -13.66 |
Consensus MFE | -11.12 |
Energy contribution | -11.52 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.81 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929613 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13334733 91 - 27905053 ACUCAGUGCCGCA---UCCACAGCCCAAUCUCAAUCCCAACCCUCUGGAAAAAGUUUUCGUGUACUGGCAAACACUUUUUCCUUACACAACCCC .....(((..((.---......))......................(((((((((.....(((....)))...)))))))))...)))...... ( -13.40) >DroSec_CAF1 87273 91 - 1 ACUCAGUGGCGCA---UCCACAGCCCAAUCUCAAUCCCAACCCUCUGGAAAAAGUUUUCGUGUACUGGCAAACACUUUUUCCUUACACAACCCC .....((((....---.)))).........................(((((((((.....(((....)))...)))))))))............ ( -15.20) >DroSim_CAF1 91543 91 - 1 ACUCAGUGGCGCA---UCCACAGCCCAAUCUCAAUCCCAACCCUCUGGAAAAAGUUUUCGUGUACUGGCAAACACUUUUUCCUUACACAACCCC .....((((....---.)))).........................(((((((((.....(((....)))...)))))))))............ ( -15.20) >DroEre_CAF1 93599 85 - 1 ACUCAGAGCCGCA---UCCACAGCCCGA------UCCCAACUCUCUGGAAAAAGUUUUCGUGUACUGGCAAACACUUUUUCCUUACACAACCCC ....((((..(.(---((........))------).)...))))..(((((((((.....(((....)))...)))))))))............ ( -12.70) >DroYak_CAF1 104894 88 - 1 ACUCAGUACCGCAUCAUCCACAGCCCAG------UCCCAACCCUCUGGAAAAAGUUUUCGUGUACUGGCAAACACUUUUUCCCUACACAACCCC ..((((((((((..........))((((------..........))))...........).))))))).......................... ( -11.80) >consensus ACUCAGUGCCGCA___UCCACAGCCCAAUCUCAAUCCCAACCCUCUGGAAAAAGUUUUCGUGUACUGGCAAACACUUUUUCCUUACACAACCCC .....(((..((..........))......................(((((((((.....(((....)))...)))))))))...)))...... (-11.12 = -11.52 + 0.40)
Location | 13,334,824 – 13,334,914 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 84.12 |
Mean single sequence MFE | -17.73 |
Consensus MFE | -13.22 |
Energy contribution | -13.38 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.08 |
Mean z-score | -2.05 |
Structure conservation index | 0.75 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13334824 90 - 27905053 AAUGCCAUCAUCAUCGGCACCACCGCCCCCCACUUGCGGUCUGCACCACUCAACAAGGAAAGCAGACUUUA---CACCCACAUCCGCAUCCAC .((((..........(((......)))..........(((((((.((.........))...)))))))...---...........)))).... ( -16.80) >DroSec_CAF1 87364 90 - 1 AAUGCCAUCAUCAUCGGCACCACCGCCCCCCAGUUGCGGUCUGCACCACUCAACAAGGAAAGCAGACGUUA---CACCCACAUCCGCACCCAC ..(((..........(((......))).....((.(((.(((((.((.........))...)))))))).)---)..........)))..... ( -17.60) >DroSim_CAF1 91634 89 - 1 AAUGCCAUCAUCAUCGGCACCACCGCC-CCCAGUUGCGGUCUGCACCACUCAACAAGGAAAGCAGACUUUA---CCCCCACAUCCGCACCCAC ..(((..........(((......)))-....((...(((((((.((.........))...)))))))..)---)..........)))..... ( -16.40) >DroEre_CAF1 93684 78 - 1 AAUGCCAUCAUCAUCGGCACCACCGCCCCUCAGUUGCGGUCUGCACCACUCAACAAGGAAAGCAGACCCUA---CACC------------CAC ..((((.........)))).............((.(.(((((((.((.........))...)))))))).)---)...------------... ( -17.90) >DroYak_CAF1 104982 90 - 1 AAUGCCAUCAUCAUCGGCACCACAGCCCAUCAGUUGGGGUCUGCACCACUCAACAAGGAAAGCAGACCUUA---CACCCACAUCCGCACCCAC ..(((..........(((......))).....((.(((((((((.((.........))...))))))))))---)..........)))..... ( -21.30) >DroAna_CAF1 106543 85 - 1 UCUGCCAUCAUCAUCGGCACCAUCGCCCCCAGUUUGCGGUCUGCACCACUCAACAAGCAGUGCUGACUUUCAGCCACCCACAUCC-------- .((((..........(((......)))....(((.(.(((....))).)..)))..)))).((((.....))))...........-------- ( -16.40) >consensus AAUGCCAUCAUCAUCGGCACCACCGCCCCCCAGUUGCGGUCUGCACCACUCAACAAGGAAAGCAGACUUUA___CACCCACAUCCGCACCCAC ..((((.........))))..................(((((((....((.....))....)))))))......................... (-13.22 = -13.38 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:17 2006