| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,330,121 – 13,330,215 |
| Length | 94 |
| Max. P | 0.707750 |
| Location | 13,330,121 – 13,330,215 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 72.72 |
| Mean single sequence MFE | -21.55 |
| Consensus MFE | -10.37 |
| Energy contribution | -11.07 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13330121 94 - 27905053 GA--UGACGUGC-CGUGAAGCAUGUGCCUUGCGAUUAUCAAAGUGUGAUAA-AAGUGCGCCAACAAUAGCCAAAA-AGACAG-GC--GGAA-AAACGCUCGAA ..--((.((..(-((..(.((....)).)..)).((((((.....))))))-..)..)).)).............-...(..-((--(...-...)))..).. ( -20.80) >DroVir_CAF1 82257 86 - 1 GC--UGACGUGU-CGUGAAGCAUGUGCCACACGAUUAUCAAAGUGUGAUAA-AAUUGCGGCAACAAUGCCAAAA--GCCAAU-GC--UGAA--------AAAA ((--.......(-((((..((....))..)))))((((((.....))))))-....))((((....))))...(--((....-))--)...--------.... ( -19.20) >DroPse_CAF1 98234 89 - 1 GC--UGACGUGC-CGUGAAGCAUGUGCCAUGCGAUUAUCAAAGUGUGAUAA-AAUUGCGGCAACAAUAGCCAGAA-AGCAAA-A--------AAAAAAGCGAA ((--((...(((-((..(.(((((...)))))..((((((.....))))))-..)..)))))....)))).....-.((...-.--------......))... ( -23.70) >DroGri_CAF1 83828 89 - 1 GG--UGACGUGU-CAUGAAGCAUGUGCCACACGAUUAUCAAAGUGUGAUAAAAAUUGCGGCAACAGUGCCAGAAAGGGAAAU-GC--CAAA--------AAUA ((--(.((((((-......)))))))))......((((((.....)))))).......((((....(.((.....)).)..)-))--)...--------.... ( -19.90) >DroWil_CAF1 80267 100 - 1 GCUCUGACAUGAAAGUAAAGCAUUUGCCAUGCGAUUAUCAAAGUGUGAUAA-AAUUGCGGCAACAAUGGCAAACA-GGACAAUGUGGGGAAUAAAAAGAAGA- ..(((.((((....((......((((((((((((((((((.....))))).-.)))))(....).))))))))..-..)).)))).))).............- ( -23.00) >DroAna_CAF1 102105 94 - 1 GC--UGACGUGC-CAUGAAGCAUGUGCCGUGCGAUUAUCAAAGUGUGAUAA-AAUUGCGGCAACAAUAGCCAGAA-UUCGGG-AC--GAAA-AAAAAAUUAAG ((--((((((((-......))))))((((((...((((((.....))))))-...)))))).....)))).....-((((..-.)--))).-........... ( -22.70) >consensus GC__UGACGUGC_CGUGAAGCAUGUGCCAUGCGAUUAUCAAAGUGUGAUAA_AAUUGCGGCAACAAUAGCAAAAA_GGAAAA_GC__GGAA_AAAAA__AAAA ......((((((.......))))))(((..((((((((((.....)))))...)))))))).......................................... (-10.37 = -11.07 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:14 2006