Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,895,596 – 1,895,701 |
Length | 105 |
Max. P | 0.995226 |
Location | 1,895,596 – 1,895,701 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 86.72 |
Mean single sequence MFE | -39.24 |
Consensus MFE | -34.40 |
Energy contribution | -35.40 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.13 |
Mean z-score | -2.42 |
Structure conservation index | 0.88 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995226 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1895596 105 - 27905053 CGAGU-GGAUAGCCGGAGACCUGCAACUAAUUGCCGCCAUCGGGGGCUUAAAAGGUCAAGGCGAA-AGGCGGCACUUGGUUGGGGGAUUUCGAGGAGA------GAUAGCACA ...((-(.((..((.(((((((.(((((((.(((((((.(((..((((.....))))....))).-.))))))).))))))).))).))))..))...------.))..))). ( -42.00) >DroSec_CAF1 53971 105 - 1 CGAGU-GGAUAGUCGGAGACCUGCGACUAAUUGCCGCCAUCGGGGGCCUAAAAGGUCAAGGCGAA-AGGCGGCACUUGGCUGGGGGAUUUCGAGGAGA------GAUAGCACU ..(((-(.((..((((((.(((.((.((((.(((((((.(((..((((.....))))....))).-.))))))).)))).)).))).)))))).....------.))..)))) ( -38.30) >DroSim_CAF1 54773 105 - 1 CGAGU-GGAUAGUCGGAGACCUGCGACUAAUUGCCGCCAUCGGGGGCCUAAAAGGUCAAGGCGAA-AGGCGGCACUUGGCUGGGGGAUUUCGAGGAGA------GAUAGCACU ..(((-(.((..((((((.(((.((.((((.(((((((.(((..((((.....))))....))).-.))))))).)))).)).))).)))))).....------.))..)))) ( -38.30) >DroEre_CAF1 56161 106 - 1 CGAGUGGGAUGGUCGGAGACCUGCGACUAAUUGCCGCCAUCGAGGGCUUAAAAGGUCAAGGCGCAAAGGCGGCACUUGGUUGG-GAAUCCCGAGAAGU------GAUAGCACU ....((((((((((...))))..(((((((.(((((((..((..((((.....))))....))....))))))).))))))).-..))))))...(((------(....)))) ( -39.50) >DroYak_CAF1 59821 106 - 1 ------GGAUAGUCGGAGACCUGCGACUAAUUGCCGCCAUCGAGGGCUUAAAAGGUCAAGGCGAAACGGCGGCAGUUGGUUGG-GAAUUCUGAGAAGAGGUGCAGAUAGGAAU ------........(....)((((((((((((((((((.(((..((((.....))))....)))...))))))))))))))..-...((((....))))..))))........ ( -38.10) >consensus CGAGU_GGAUAGUCGGAGACCUGCGACUAAUUGCCGCCAUCGGGGGCUUAAAAGGUCAAGGCGAA_AGGCGGCACUUGGUUGGGGGAUUUCGAGGAGA______GAUAGCACU ............((((((.(((.(((((((.(((((((.(((..((((.....))))....)))...))))))).))))))).))).)))))).................... (-34.40 = -35.40 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:47 2006