Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,327,244 – 13,327,357 |
Length | 113 |
Max. P | 0.986411 |
Location | 13,327,244 – 13,327,357 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 76.29 |
Mean single sequence MFE | -22.91 |
Consensus MFE | -12.50 |
Energy contribution | -12.86 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -2.61 |
Structure conservation index | 0.55 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986411 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13327244 113 - 27905053 GGCAAACAGUGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGUCUC-AAAGCAAGAAAAAUUAUAUUGCUUAAUGCCU---GCACCACCGGCAACCAUCAGACC-ACCACUUGC .((((...(((((((((((((((.................))).))))..-.((((((...........))))))...))))---))))....(((........).))-.....)))) ( -28.63) >DroPse_CAF1 95650 90 - 1 AGCAAACAUCGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGACUC-AAAGCAAGAAAAAUUAUAUUGCUUAACGCCU---GCCACCCUC------------------------ ..........(((((((..((((.................))))......-.((((((...........))))))..)))))---)).......------------------------ ( -20.73) >DroEre_CAF1 81063 113 - 1 AGCAAACACUGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGUCUC-AAAGCAAGAAAAAUUAUAUUGCUUAACGCCU---GCACCACUGGCAC-CACCGGCCCAACCACUUUC .((......((((((((((((((.................))).))))..-.((((((...........))))))...))))---)))......))..-....((.....))...... ( -26.33) >DroWil_CAF1 77511 102 - 1 AACAAACAUCCCAGGUGACGAGCAUUAAAACGAUUCAACAGCUC-GACUCAAAAGCAAGAAAAAUU--AUUGCUUGACGCCCUAUGCUCUUGC-------CUCACACC-AUCA----- .............((((.(((((.................))))-)........((((((...((.--...((.....))...))..))))))-------....))))-....----- ( -19.73) >DroAna_CAF1 99140 104 - 1 AACAAACAUUGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGUCUC-AAAGCCAGAAAAAUUAUAUUGCUUUACGCCU---GCAAGACCCACAA-------ACC-ACUACAU-- ........(((((((((((((((.................))).))))..-(((((...............)))))..))))---)))).........-------...-.......-- ( -21.29) >DroPer_CAF1 89796 90 - 1 AGCAAACAUCGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGACUC-AAAGCAAGAAAAAUUAUAUUGCUUAACGCCU---GCCACCCUC------------------------ ..........(((((((..((((.................))))......-.((((((...........))))))..)))))---)).......------------------------ ( -20.73) >consensus AGCAAACAUCGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGACUC_AAAGCAAGAAAAAUUAUAUUGCUUAACGCCU___GCAACACCC___________ACC_ACCA_____ ..........(((((((..((((.................))))........((((((...........))))))..)))))...))............................... (-12.50 = -12.86 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:12 2006