| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,319,397 – 13,319,487 |
| Length | 90 |
| Max. P | 0.985968 |
| Location | 13,319,397 – 13,319,487 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.70 |
| Mean single sequence MFE | -25.86 |
| Consensus MFE | -9.80 |
| Energy contribution | -10.24 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.38 |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.985968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13319397 90 - 27905053 AU---UUCAUAGGAAAGU--G----------------UGGCUGAAAGUAGUGUAGUUUAUACUUUUAGUAU---------UCCGCUCUGGCUGGAAAACAGCCAAGAUGGCAAAGCUAAC ..---......((((...--.----------------..((((((((((..........)))))))))).)---------)))(((.((((((.....))))))....)))......... ( -25.00) >DroSec_CAF1 71965 90 - 1 AU---UUCAUAGGAAAGU--G----------------CUGCUGAAAGUUGUGUAGUUUUUUGUUUUAGUAG---------UCCGAUCUGGCUGGAAAACAGCCAAGAUGGCAAAGCUAAC ..---...((((((((.(--(----------------(.((.....))...))).)))))))).(((((..---------(((.(((((((((.....))))).)))))).)..))))). ( -24.30) >DroSim_CAF1 76140 89 - 1 AC---GUCAUAGGAAAAG--G----------------CUGUUGAAAGUACU-UGGUUUUUAGUUUUAGCAG---------UCCGAUCUGGCUGAAAAACAGCCAAGAUGGCAAAGCUAAC ..---(((((.(((...(--(----------------(((((((((.((..-.......)).)))))))))---------))...)))(((((.....)))))...)))))......... ( -26.50) >DroEre_CAF1 73317 106 - 1 AU---AUCAUAUCAUAUU--GUU---------GUCAACUACUGAAAGCAGUGUGGCUUAUAGUUCUAAAAUUUCCAAGAAUCCGUUCUGGCUGGAAAACAGCCAAGCUCGCAAAACUAAC ..---.......((((((--(((---------.(((.....))).)))))))))((.....(((((..........)))))..(((.((((((.....)))))))))..))......... ( -25.00) >DroYak_CAF1 89361 120 - 1 GUUUCAUCAUAUUAUAUUUUGUUAAAUACACGUUCAGCUGCUGAAAGUGGUGUAGAUUUUAGUUUUAUAAUUAUAAUGAACACGUUCAGGCUGGAAAACAGCCAAAUUGACAAAACUAAA ................(((((((((...(((.(((((...))))).)))((((..(((.(((((....))))).)))..)))).....(((((.....)))))...)))))))))..... ( -28.50) >consensus AU___AUCAUAGGAAAGU__G________________CUGCUGAAAGUAGUGUAGUUUUUAGUUUUAGAAU_________UCCGAUCUGGCUGGAAAACAGCCAAGAUGGCAAAGCUAAC .......................................(((((((((......))))))))).........................(((((.....)))))................. ( -9.80 = -10.24 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:11 2006