| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,306,912 – 13,307,019 |
| Length | 107 |
| Max. P | 0.933738 |
| Location | 13,306,912 – 13,307,019 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.93 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -11.76 |
| Energy contribution | -12.79 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.39 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933738 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13306912 107 + 27905053 ---UAGCUGUUUGCACAGCGCUCUCAGGCUCCG-GCAAUAUCAACAAAAUCAGCGUCAUAAAGUGCCAACUGCAAACUGAC--GCAGCUGUAGUAA--GU----GGGGGUAUACA-GCAG ---..(((((....)))))(((.....(((((.-((................((((((.....(((.....)))...))))--)).((....))..--))----.)))))....)-)).. ( -31.30) >DroPse_CAF1 76223 110 + 1 ---UUGCUGUUUGCACAGCGCUCUU--GCGCUG-GCAAUAUCAACAAAAUCAGCGUCAUAAAGUGGCAACUCCCAGCGAACUCCCAGCCACAUUCACAGU----CGCUGGAUACUGGCAU ---.((((((((((.((((((....--))))))-....................(((((...)))))........))))))..(((((.((.......))----.))))).....)))). ( -35.30) >DroGri_CAF1 59515 99 + 1 ---UUGGUGUUUGCACAGCGCUCUU---CGUUU-GCAAUAUCAACAAAAUCAGCGCCAUAAAGUGCCAACUGGCAACCACA--AAA-------UCUAGACUGUUAGCUGGAU----GCA- ---((((((((.(((.((((.....---)))))-))))))))))........((.........((((....))))......--..(-------(((((........))))))----)).- ( -23.30) >DroWil_CAF1 59633 107 + 1 GCAUUGCUGUUUGCACAGAGCUCUUCCACUCGGCGCAAUAUCAACAAAAUCAGCGUCAUAAAGUGCAAACUGCCAACCGCA--AAA-------UCUCAAU----CGAUACACAAUUUCAC ((.((((.((((((((.(((........)))(((((................))))).....)))))))).).)))..)).--...-------.......----................ ( -24.09) >DroAna_CAF1 80788 106 + 1 ---UAGCUGUUUGCACAGCGCUCUCUGGCACUG-GCAAUAUCAACAAAAUCAGCGUCAUAAAGUGCCAACUGCAAACUGCC--GCAGCCGGAAUAA--GG----CGGAGUUUAU--GUAG ---..((.(((((((..(((((.(.((((.(((-(..............)))).)))).).)))))....))))))).)).--...(((.......--))----).........--.... ( -28.24) >DroPer_CAF1 70233 110 + 1 ---UUGCUGUUUGCACAGCGCUCUU--GCGCUG-GCAAUAUCAACAAAAUCAGCGUCAUAAAGUGCCAACUCCCAGCGAACUCCCAGCCACAUUCACAGU----CGCUGGAUACUGGCAU ---..((((.((((.((((((....--))))))-))))............))))........((((((....(((((((.((...............)))----))))))....)))))) ( -38.38) >consensus ___UUGCUGUUUGCACAGCGCUCUU__GCGCUG_GCAAUAUCAACAAAAUCAGCGUCAUAAAGUGCCAACUGCCAACCAAC__ACAGCC__A_UCACAGU____CGCUGGAUACU_GCAG .....((((.((((.((((((......)))))).))))............)))).......(((....)))................................................. (-11.76 = -12.79 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:08 2006