Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,304,199 – 13,304,289 |
Length | 90 |
Max. P | 0.800219 |
Location | 13,304,199 – 13,304,289 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 91.85 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -20.15 |
Energy contribution | -20.60 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -2.28 |
Structure conservation index | 0.78 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13304199 90 + 27905053 GUAUCAUUUUCCAAGAACAUGGGGCACCCAAUUCAGAUGGGGAACGUGGCCAUCUGAAAUGUCCACCCAUGCAUUCAUUGCUAAUUUGGA .........((((((...(((((.....((.(((((((((.........))))))))).))....)))))(((.....)))...)))))) ( -27.50) >DroSec_CAF1 56668 83 + 1 GUAUCAUUUUUCAAGGACAUGGGGCACACAAUUCAGAUGGGGAACGUGGCCAUCUGAAAUG------CAUGC-UUCAUUACUAAUUUGGA .........((((((...((((((((..((.(((((((((.........))))))))).))------..)))-)))))......)))))) ( -24.90) >DroSim_CAF1 60294 90 + 1 GUAUCAUUUUUCAAGGACAUGGGGCACACAAUUCAGAUGGGGAACGUGGCCAUCUGAAAUGUCCACCCAUGCAUUCAUUACUAAUUUGGA ..............(((((((((....(((.(((((((((.........))))))))).)))...))))))..))).............. ( -25.00) >consensus GUAUCAUUUUUCAAGGACAUGGGGCACACAAUUCAGAUGGGGAACGUGGCCAUCUGAAAUGUCCACCCAUGCAUUCAUUACUAAUUUGGA ..............(((((((((.....((.(((((((((.........))))))))).))....))))))..))).............. (-20.15 = -20.60 + 0.45)
Location | 13,304,199 – 13,304,289 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 91.85 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -20.68 |
Energy contribution | -21.34 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -3.23 |
Structure conservation index | 0.75 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13304199 90 - 27905053 UCCAAAUUAGCAAUGAAUGCAUGGGUGGACAUUUCAGAUGGCCACGUUCCCCAUCUGAAUUGGGUGCCCCAUGUUCUUGGAAAAUGAUAC (((((.(((....)))..(((((((.(.((..(((((((((.........)))))))))....)).))))))))..)))))......... ( -30.40) >DroSec_CAF1 56668 83 - 1 UCCAAAUUAGUAAUGAA-GCAUG------CAUUUCAGAUGGCCACGUUCCCCAUCUGAAUUGUGUGCCCCAUGUCCUUGAAAAAUGAUAC ............(((..-(((((------((.(((((((((.........))))))))).)))))))..)))(((.((....)).))).. ( -24.70) >DroSim_CAF1 60294 90 - 1 UCCAAAUUAGUAAUGAAUGCAUGGGUGGACAUUUCAGAUGGCCACGUUCCCCAUCUGAAUUGUGUGCCCCAUGUCCUUGAAAAAUGAUAC .....((((.........(((((((.(.(((((((((((((.........)))))))))..)))).))))))))..........)))).. ( -27.41) >consensus UCCAAAUUAGUAAUGAAUGCAUGGGUGGACAUUUCAGAUGGCCACGUUCCCCAUCUGAAUUGUGUGCCCCAUGUCCUUGAAAAAUGAUAC .....((((.........(((((((....((.(((((((((.........))))))))).)).....)))))))..........)))).. (-20.68 = -21.34 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:03 2006