| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,294,000 – 13,294,109 |
| Length | 109 |
| Max. P | 0.816055 |
| Location | 13,294,000 – 13,294,109 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 83.32 |
| Mean single sequence MFE | -20.05 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.60 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.816055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13294000 109 - 27905053 UAAUCUUAUAAUCUGUAUAGUAAAAUCUACGAAAUAAACGCUGUUU-UUUGCUGUGAACAAAUUUACCAACAGCAGAUAGAGCGAUGGACGUAUGUCCGUAUAAAAAAUU ...................(((.....)))........((((.(..-((((((((..............)))))))).).))))((((((....)))))).......... ( -22.64) >DroSec_CAF1 46245 109 - 1 UAAUCUUAUAAUCUUUAUAGUAAAAUCUACGAAAUAAACGCUGUUU-UUUGCUGUGAACAAAUUUACCAACAGCAGAUAAAGCGAUGGACGUAUGUCCGUAUAAAAAAUU .............((..(((......)))..)).....((((....-((((((((..............))))))))...))))((((((....)))))).......... ( -23.44) >DroSim_CAF1 49783 109 - 1 UAAUCUUAUAAUCUGUAUAGUAAAAUCUACGAAAUAAACGCUGUUU-UUUGCUGUGAACAAAUUUACCAACAGCAGAUAAAGCGAUGGACGUAUGUCCGUAUAAAAAAUU ...................(((.....)))........((((....-((((((((..............))))))))...))))((((((....)))))).......... ( -22.64) >DroEre_CAF1 48105 90 - 1 --------------------AAAAAUCAACAAGAUAACCGCUGUUUUUUUGCCGUGAACGAAUUUACCAACAGCAGAUAAAGCGAUGGACGUAUGUCCGUAUAAAAAAUU --------------------..................((((.....(((((.((..............)).)))))...))))((((((....)))))).......... ( -16.94) >DroYak_CAF1 57421 94 - 1 AAAUC---------------AAAAAUCAAUAAGAUAGUCGCUGUUU-UUUGCUGUGAACGAAUUUACCAAAAGCAGAUAAAACGAUGGACGUAUGUCCGUAUAAAAAAUU .....---------------................((((...((.-(((((((((((....)))))....)))))).))..))))((((....))))............ ( -14.60) >consensus UAAUCUUAUAAUCU_UAUAGUAAAAUCUACGAAAUAAACGCUGUUU_UUUGCUGUGAACAAAUUUACCAACAGCAGAUAAAGCGAUGGACGUAUGUCCGUAUAAAAAAUU ......................................((((.....((((((((..............))))))))...))))((((((....)))))).......... (-18.00 = -18.60 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:00 2006