| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,293,783 – 13,293,888 |
| Length | 105 |
| Max. P | 0.531313 |
| Location | 13,293,783 – 13,293,888 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.62 |
| Mean single sequence MFE | -28.90 |
| Consensus MFE | -15.53 |
| Energy contribution | -15.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13293783 105 - 27905053 GACCAUCGAAUAAAGAUGGCGCAGUGGAAACAGGAAAAUAAGU-UGAAAGGCACUUUUUGCGCUUGAGUGCUGUUGCAAAGCGUGUGGCAGGCUACCGGAAACGGA ...((((.......))))((((((((....)).........((-(....))).....))))))...(((.((((..((.....))..))))))).(((....))). ( -34.20) >DroVir_CAF1 48286 104 - 1 GAA--GAAAACGAAGAUGGCAAAAUAGAAACAGGAAAAUAACUUUGAAAGGCACUUUUUACACUUGAGUGCCCGGGCAAAGCGUGUCGCAUGGUACCGGAAGCGGA ...--....((.(.(.(((((....................(((((...(((((((.........)))))))....)))))..)))))).).)).(((....))). ( -20.65) >DroPse_CAF1 64884 101 - 1 GGACGCC----GAAGACGGCGAAAUAGAAGCAGGAAAAUAAGU-UGAAAGGCACUUUUUGCGCUUGAGUGCUCUUGCAAAGAGUGUCGCAUGCCACCGGAAACGGA ((.((((----(....)))))......................-.....(((((((((((((...((....)).))))))))))))).....)).(((....))). ( -35.60) >DroMoj_CAF1 47418 103 - 1 AAA--GAAAACGAAGAUGGUAAAAUAGAAACAGGAAAAUAACU-UGAAAGGCACUUUUUACACUUGAGUAGUCGGGCAAAGCGUGUUGCAUGGUACCGGAAACGGA ...--((..((.(((...((((((......((((.......))-)).........)))))).)))..))..))..((((......))))......(((....))). ( -16.66) >DroAna_CAF1 68073 105 - 1 GUCUAUAAUAGGAAGAUGGCGCAAUGGAACCAGGAAAAUAAGU-UGAAAGGCACUUUUUAAGCUUGAGUGCUGCUGCAAAGCAUGUCGUCUGCCACCGGAAACGGA ..........((.((((((((......................-.....(((((((.........)))))))(((....))).)))))))).)).(((....))). ( -30.70) >DroPer_CAF1 58889 101 - 1 GGACGCC----GAAGACGGCGAAAUAGAAGCAGGAAAAUAAGU-UGAAAGGCACUUUUUGCGCUUGAGUGCUCUUGCAAAGAGUGUCGCAUGCCACCGGAAACGGA ((.((((----(....)))))......................-.....(((((((((((((...((....)).))))))))))))).....)).(((....))). ( -35.60) >consensus GAAC_CAAAA_GAAGAUGGCGAAAUAGAAACAGGAAAAUAAGU_UGAAAGGCACUUUUUACGCUUGAGUGCUCUUGCAAAGCGUGUCGCAUGCCACCGGAAACGGA .................((((............................(((((((.........)))))))...((..........)).)))).(((....))). (-15.53 = -15.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:59 2006