Locus 5047

Sequence ID 3R_DroMel_CAF1
Location 13,293,543 – 13,293,639
Length 96
Max. P 0.605168
window8236

overview

Window 6

Location 13,293,543 – 13,293,639
Length 96
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 88.01
Mean single sequence MFE -15.50
Consensus MFE -12.43
Energy contribution -12.83
Covariance contribution 0.40
Combinations/Pair 1.05
Mean z-score -2.10
Structure conservation index 0.80
SVM decision value 0.14
SVM RNA-class probability 0.605168
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13293543 96 + 27905053
CUUUUAUACAAAGGCCUUCUGCAUUUAGCU---------UUUAAAAACAUUGCGACUCGUUCUCAAUUUCUUAGAAUUUGCAUUUCUGCCUUUGACAACACUUU--U
........(((((((....((((......(---------(((((.((.((((.((.....)).)))))).))))))..)))).....)))))))..........--. ( -15.70)
>DroSec_CAF1 45802 96 + 1
CUUUUAUACAAAGGCCUUCUGCAUUUAGCU---------UUUAAAAACAUUGCGACUCGUUCUCAAUUUCUUAGAAUUUGCAUUUCUGCCUUUGACAACACUUU--U
........(((((((....((((......(---------(((((.((.((((.((.....)).)))))).))))))..)))).....)))))))..........--. ( -15.70)
>DroSim_CAF1 49330 98 + 1
CUUUUAUACAAAGGCCUUCUGCAUUUAGCU---------UUUAAAAACAUUGCGACUCGUUCUCAAUUUCUUAGAAUUUGCAUUUCUGCCUUUGACAACACUUUUUU
........(((((((....((((......(---------(((((.((.((((.((.....)).)))))).))))))..)))).....)))))))............. ( -15.70)
>DroEre_CAF1 47640 104 + 1
AUUUUACACAAAGGCCUUCUGCAUUUAGCUUUUUUCGCUUUUAAAAACAUUGCGACUCGUUCUCAAUUUCUAAGAAUUUGCAUUUCUGCCUUUGACAACACUUU---
........(((((((....((((...........((((.............))))...(((((.........))))).)))).....)))))))..........--- ( -18.12)
>DroYak_CAF1 56936 106 + 1
AUUUUAUACAAAGGCCUUCUGCAUUUAGCUUUUUCAGCUUUUAAAAACAUUGCGACUCGUUCUCAAUUUCUUGGAAUUUGCAUUUCUGCCUUUGACAACACUUUU-U
........(((((((...........((((.....))))...........(((((...((((.(((....)))))))))))).....)))))))...........-. ( -18.60)
>DroPer_CAF1 58635 88 + 1
AUUUUACACAAAGAGUUUCUG-------CU---------UUUAAAAAUAUUGCGACUCGUU-UCAAUUUCUUAGAAUUUGCAUUUCUGCCUUUGACAAUACUUU--U
........(((((.((...((-------((---------(((((....((((.((....))-.))))...))))))...))).....)))))))..........--. (  -9.20)
>consensus
AUUUUAUACAAAGGCCUUCUGCAUUUAGCU_________UUUAAAAACAUUGCGACUCGUUCUCAAUUUCUUAGAAUUUGCAUUUCUGCCUUUGACAACACUUU__U
........(((((((.....((.....)).....................(((((...(((((.........)))))))))).....)))))))............. (-12.43 = -12.83 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:57 2006