Locus 5046

Sequence ID 3R_DroMel_CAF1
Location 13,290,256 – 13,290,348
Length 92
Max. P 0.590484
window8235

overview

Window 5

Location 13,290,256 – 13,290,348
Length 92
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 83.60
Mean single sequence MFE -23.60
Consensus MFE -16.54
Energy contribution -16.65
Covariance contribution 0.11
Combinations/Pair 1.20
Mean z-score -1.96
Structure conservation index 0.70
SVM decision value 0.11
SVM RNA-class probability 0.590484
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13290256 92 - 27905053
GUGCUGUCAGCAAAUUUCAUUUCUUAUUGUCAAUCGAGGAGUGAUAUGCUUUUAGCAAUAAGCAACAAACGGAAAUGCACACUUGCGUUU-CU------------
.(((((..((((....(((((((((..(....)..)))))))))..))))..))))).............(((((((((....)))))))-))------------ ( -27.10)
>DroVir_CAF1 44376 105 - 1
UAGCUGCAAGCGUACUGCAUUUCUUAUGGCCAAUUGUCAACUGAUAUGCUGGCAGCAACAAGCAGCAAACGGAAAUGCGAUUUUGCCUUUUCUAUAUAUAGAUAU
..(((((..((.....))..........((((..((((....))))...))))........)))))....(((((.(((....))).)))))............. ( -24.00)
>DroPse_CAF1 61863 92 - 1
GUGCUGUCAGCAAAUUUCAUUUCUUAUUGUCAAUUGAGGAGUGAUAUGCUUUUAGCCAUAUGCAACAAACGGAAAUGCACACUUGCGAUU-UU------------
(.((((..((((....((((((((((........))))))))))..))))..)))))..............((((((((....))).)))-))------------ ( -21.60)
>DroYak_CAF1 53632 92 - 1
GUGCUGUCAGCAAAUUUCAUUUCUUAUUGUCAAUCGAGGAGUGAUAUGCUUUUAGCAAUAAGCAACAAACGGAAAUGCACACUUGCGAUU-CU------------
.(((((..((((....(((((((((..(....)..)))))))))..))))..))))).............((((.((((....)))).))-))------------ ( -23.10)
>DroAna_CAF1 65060 91 - 1
-UGCUGUCAGCAAAUUUCAUUUCUUAUUGUCAAUCGAGGAGUGAUAUGCUUUUAGCAAUAAGCAAGAAACGGAAAUGCACACUUGCGUUU-UU------------
-(((((..((((....(((((((((..(....)..)))))))))..))))..))))).............(((((((((....)))))))-))------------ ( -24.20)
>DroPer_CAF1 55861 92 - 1
GUGCUGUCAGCAAAUUUCAUUUCUUAUUGUCAAUUGAGGAGUGAUAUGCUUUUAGCCAUAUGCAACAAACGGAAAUGCACACUUGCGAUU-UU------------
(.((((..((((....((((((((((........))))))))))..))))..)))))..............((((((((....))).)))-))------------ ( -21.60)
>consensus
GUGCUGUCAGCAAAUUUCAUUUCUUAUUGUCAAUCGAGGAGUGAUAUGCUUUUAGCAAUAAGCAACAAACGGAAAUGCACACUUGCGAUU_CU____________
..((((..((((....(((((((((..........)))))))))..))))..))))....................(((....)))................... (-16.54 = -16.65 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:56 2006