| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,284,240 – 13,284,342 |
| Length | 102 |
| Max. P | 0.873550 |
| Location | 13,284,240 – 13,284,342 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.77 |
| Mean single sequence MFE | -15.34 |
| Consensus MFE | -9.82 |
| Energy contribution | -9.68 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13284240 102 - 27905053 --CUCAAACCCCAGCGUGCAUAUUUUAUGACUUUUAUCAUAAUUUAUGCGUUGAUACAGCAAAUGCAUAAAAUUAAAUUCAAUUCACACAG--AC--AUAC--AGACUCG- --...........(((((((((..((((((......))))))..)))))((((...))))..)))).........................--..--....--.......- ( -17.00) >DroVir_CAF1 39582 109 - 1 CCCUCUACCCAGAACAUGUAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACUGCAAAUGCAUGAAAUUAAAUUCAAUUCAUCCAG--AUAUAUCUACAUGCAUAU .........(((..((((((((..(((((........)))))..)))))).))...)))...(((((((.((((......)))).....((--(....))).))))))).. ( -16.10) >DroPse_CAF1 48997 101 - 1 --CUCU-CCCGCACUGUACAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACUGCAAAUGCAUAAAAUUAAAUUCAAUUCGAACGC--AC--ACCC--AUGCUCC- --....-...(((.(((.(.....(((((........)))))((((((((((.........))))))))))..................).--))--)...--.)))...- ( -12.50) >DroMoj_CAF1 36105 106 - 1 CCCUCGGCCUAC-ACAUGCAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUCAUACUGCAAAUGCAUAAAAUUAAAUUCAAUUCAUUCAG--AU--AUCUGCAUGCAUAU ......((....-..(((((((..(((((........)))))..))))))).......))..((((((..((((......))))....(((--..--..))).)))))).. ( -16.62) >DroAna_CAF1 59895 103 - 1 --CUCU-CCGCCGGCAUACAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACAGCAAAUGCAUAAAAUUAAAUUCAAUUCACACACCAAC--CCAC--ACACUGC- --....-.....((((((.......))))))...........((((((((((.........))))))))))........................--....--.......- ( -16.00) >DroPer_CAF1 50354 101 - 1 --CUCU-CCACCACUAUACAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACUGCAAAUGCAUAAAAUUAAAUUCAAUUCGAACGC--AC--ACAC--AGGCUCC- --....-.....................((((..........((((((((((.........))))))))))......(((.....)))...--..--....--))))...- ( -13.80) >consensus __CUCU_CCCCCAACAUACAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACUGCAAAUGCAUAAAAUUAAAUUCAAUUCAAACAC__AC__ACAC__AUGCUCC_ ........................(((((........)))))((((((((((.........))))))))))........................................ ( -9.82 = -9.68 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:54 2006