| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,280,936 – 13,281,026 |
| Length | 90 |
| Max. P | 0.743511 |
| Location | 13,280,936 – 13,281,026 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 86.22 |
| Mean single sequence MFE | -24.83 |
| Consensus MFE | -20.21 |
| Energy contribution | -20.35 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.743511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13280936 90 - 27905053 -A--AACGAGGAGUCUAGGCGUCCUUGUGGCUGCCUUAAAUCAAAAGCUUAUGGGCAAGCUGCUUAAAAUUAACAUUAAGGCUUAAGUAUGCU--------------- -.--.(((((((((....)).)))))))...(((((................)))))((((((((((..(((....)))...))))))).)))--------------- ( -21.79) >DroSec_CAF1 33593 93 - 1 AAAAAAAAAGGAGUCUAGGCGGCCUUGUGGCUGCCUUAAAUCAAAAGCUUAUGGGCAAGCUGCUUAAAAUUAACAUUAAGGCUUAAGUAUGCC--------------- ..........((....((((((((....))))))))....))....(((....)))..(((((((((..(((....)))...))))))).)).--------------- ( -25.70) >DroSim_CAF1 37066 91 - 1 AA--AAAAAGGAGUCUAGGCGGCCUUGUGGCUGCCUUAAAUCAAAAGCUUAUGGGCAAGCUGCUUAAAAUUAACAUUAAAGCUUAAGUAUGCC--------------- ..--......((....((((((((....))))))))....))...........((((.(((((((.............))))...))).))))--------------- ( -25.72) >DroEre_CAF1 35240 90 - 1 -A--AAUAGGGAGUAUAGGCGGCCUUGUGGCUGCCUUAAAUCAAAAGCUUAUGGGCAAGCUGCUUAAAAUUAACAUUAAGGCUUAAGUAUGCC--------------- -.--..((((.(((..((((((((....))))))))..........(((....)))..))).)))).............(((........)))--------------- ( -27.00) >DroYak_CAF1 41639 90 - 1 -A--AAAAGCGAGUAUAGGCGUCGUUGUGGCUGCCUUAAAUCAAAAGCUUAUGGGCAAGCUGCUUUAAAUUAACAUUAAGGCUUAAGUAUGCC--------------- -.--..((((((....(((((((.....))).))))....))....))))...((((.((((((((((.......)))))))...))).))))--------------- ( -22.30) >DroAna_CAF1 56133 104 - 1 ----AGAAAGGAGCUUAACCGGCCUUGUGGCUGCUUUAAAUCAAAAGCUUAUGGCCAAACUGCUUAAAAUUAACAUUAAGGCUUAAGUAUGCCAUUGGCAUAGGCGUA ----........(((((..(((((....))))).............(((.(((((.....(((((((..(((....)))...))))))).))))).))).)))))... ( -26.50) >consensus _A__AAAAAGGAGUCUAGGCGGCCUUGUGGCUGCCUUAAAUCAAAAGCUUAUGGGCAAGCUGCUUAAAAUUAACAUUAAGGCUUAAGUAUGCC_______________ ..........((....((((((((....))))))))....))...........((((.(((((((.............))))...))).))))............... (-20.21 = -20.35 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:53 2006