| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,272,012 – 13,272,109 |
| Length | 97 |
| Max. P | 0.541373 |
| Location | 13,272,012 – 13,272,109 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.03 |
| Mean single sequence MFE | -20.23 |
| Consensus MFE | -10.93 |
| Energy contribution | -10.93 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13272012 97 - 27905053 AAAGGCUCUAUUUCUGCUAUUUA--AUAUUAAU----AUAUACA----GAAUGUAUG-GUUCAUGCACGGAAAUGCUGGAAAGAGCUCUGAAGAA---AUGGCAGUGUCAU ...(((.......(((((((((.--((((....----)))).((----((.((((((-...)))))).......(((......)))))))...))---))))))).))).. ( -20.20) >DroVir_CAF1 28360 100 - 1 A--CCCUGUAUUUUUGCUAUUUU--AAAAUAAUACAUAUAUACAAA--AAAUGUAUG-GAAAAUGCAUGGAAAUGUUGAAAAUCACUAUAG-AAA---AUGGCAGUGUGAA .--..........((((((((((--.........(((((((.....--..)))))))-((....((((....))))......)).......-)))---)))))))...... ( -16.60) >DroGri_CAF1 27785 102 - 1 A--CCCUGUAUUUUUGCUAUUUU--AAAAUAAUACAUAUAUACAAAAAAAAUGUAUG-GAUAAUGCAUGGAAAUGUUGGAAAUCACUAUAG-AAA---AUGGCAGUGUGAA .--..........((((((((((--.........(((((((.........)))))))-(((...((((....)))).....))).......-)))---)))))))...... ( -17.40) >DroSec_CAF1 24688 96 - 1 AAACGCUCUAUUUCUGCUAUUUA--AUAUUAAU----AUAUACA----GAAUGUAGG-GUUCAUGC-UGGAAAUGCUGGAAAGAGCUCUGAAGAA---AUGGCAGUGUCAA ..(((((((((((((..(((((.--.(((....----..)))..----)))))((((-((((...(-..(.....)..)...)))))))).))))---)))).)))))... ( -24.60) >DroMoj_CAF1 24039 103 - 1 A--CCCUGUACUUUUGCUAUUUUUAAAAAUAAUACAUAUAUACAAA-AAAAUGUAUG-GAUAAUGCAUGGAAAUGUUGGAAAUCACUAUGG-AAA---AUGGCAGUGUGCA .--....((((..(((((((((((..........(((((((.....-...)))))))-(((...((((....)))).....)))......)-)))---))))))).)))). ( -24.60) >DroAna_CAF1 48024 103 - 1 AAUCGAUCUAUUUCUGCUAUUUA--AUAAUAAU----AUAUACAAA--GAAUGUAUGGGCUUAUGCAUGGAAAUGCUGGAAAGAGUUUUGAAAAAAUAAUGGCAGUGUCAA ....(((......((((((((..--........----.((((((..--...))))))(((((..((((....))))......)))))..........)))))))).))).. ( -18.00) >consensus A__CCCUCUAUUUCUGCUAUUUA__AAAAUAAU____AUAUACAAA__AAAUGUAUG_GAUAAUGCAUGGAAAUGCUGGAAAGAACUAUGA_AAA___AUGGCAGUGUCAA .............(((((((..................((((((.......)))))).......((((....))))......................)))))))...... (-10.93 = -10.93 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:52 2006