Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,886,249 – 1,886,342 |
Length | 93 |
Max. P | 0.620280 |
Location | 1,886,249 – 1,886,342 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 73.73 |
Mean single sequence MFE | -24.72 |
Consensus MFE | -8.27 |
Energy contribution | -8.69 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.29 |
Mean z-score | -2.13 |
Structure conservation index | 0.33 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1886249 93 + 27905053 UCCAUGGAAAAUGGCAAAAGUUUAGCAUAAACUU-UUGCCGCUUUACAUGCAAAACUUGCAAUUGGCAGUGGCCGA-----------GGCGAACAUGUU-UGCCA---U ..((((.(((.(((((((((((((...)))))))-)))))).))).))))............(((((....)))))-----------((((((....))-)))).---. ( -33.00) >DroVir_CAF1 45727 82 + 1 CUUAUAUAGAAUUGCAAAACUUUGGCAUAAAGUU--UGGCGCUUUACAUGCA-AACUUGCAAUUGACAGCAGCCGA-----------AAGAAACGU------------- ................((((((((...)))))))--)(((((((((..((((-....))))..))).))).)))..-----------.........------------- ( -14.30) >DroGri_CAF1 40696 96 + 1 CUUAUAGGGAAUUGCAAAAGUUUGGCAUAAAGUU--UGCCGCUUUGCAAGUAAAACUUGCAUUUGGCAGUAGACGA-----------AUGAAAUGUGCUGUGCAACAUU ...........(((((..(((.(..(((...(((--(((.(((.((((((.....))))))...))).))))))..-----------)))..)...))).))))).... ( -26.00) >DroWil_CAF1 38615 104 + 1 UGUAUGGAAAAUGCCAAAAGUUUAGCAUAAAGUUUUUGGCGCUUAACAUGCAA-ACUUGCAAUUGGCAGCGGCCAAACCAACGAACGAACGAACAUGCC-UCCCG---G ((((((..((.((((((((..((......))..)))))))).))..)))))).-....(((.(((((....))))).....((......))....))).-.....---. ( -25.30) >DroAna_CAF1 32856 92 + 1 UCUAUGGAAAAUGGCAAAAGUUUAGCAUAAACUU-UUGGCGCUUUACAUGCAAAACUUGCAAUUGGCAGUGGCCAA-----------AGCGAACAUGUU-UUC-A---G ....(((((((((.((((((((((...)))))))-))).((((((...((((.....))))...(((....)))))-----------))))..))).))-)))-)---. ( -26.30) >DroPer_CAF1 35188 94 + 1 UCUAUGGAAAAUGGUAAAAGUUUAGCAUAAACUU-UUGGUGCUUUACAUGCAAAACUUGCAAUUGGCAGUGGCCAAA----------AACGAACAUGUU-UUCCA---G ....(((((((((((....((..(((((......-...)))))..)).((((.....)))).(((((....))))).----------.....)).))))-)))))---. ( -23.40) >consensus UCUAUGGAAAAUGGCAAAAGUUUAGCAUAAACUU_UUGGCGCUUUACAUGCAAAACUUGCAAUUGGCAGUGGCCAA___________AACGAACAUGUU_UGCCA___G ..((((.......(((..(((((.((((...................)))).))))))))..(((((....))))).................))))............ ( -8.27 = -8.69 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:45 2006