| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,265,087 – 13,265,197 |
| Length | 110 |
| Max. P | 0.820849 |
| Location | 13,265,087 – 13,265,197 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.80 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -17.55 |
| Energy contribution | -17.22 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13265087 110 + 27905053 UAGCCAUCGCUUGCUGCCCGCCAGCUGAGCCUGCCACGAUGGCAGUCUCACGUUGUCAAUCUGCAGGCCACAUUUGACAUAUAUAA--GCAAAAAAGGUUAUUA-------CA-CAUCUA (((((...((((((.......((((((((.(((((.....))))).)))).)))).......))))))....((((.(........--)))))...)))))...-------..-...... ( -32.44) >DroSec_CAF1 17753 110 + 1 UAGCCAUCGCUUGCUACCCGCCAGCUGAGCCUGCCACGAUGGCAGUCUCACGUUGUCGAUCUGCAAGACACAUUUAACAUAAAUCA--GCAAA-GAGGUUAUUA-------UUAUAUGUA (((((...((((((....((.((((((((.(((((.....))))).)))).)))).))....))))).)..............((.--.....-)))))))...-------......... ( -31.50) >DroSim_CAF1 17877 109 + 1 UAGCCAUCGCUUGCUGCCCGCCAGCUGAGCCUGCCACGAUGGCAGUCUCACGUUGUCAAUCUGCAAGACACAUUUGACAUAAAUCA--GCAAA-GAGGUUAUUA-------CA-CUUCUA (((((.((..((((((......(((((((.(((((.....))))).)))).)))(((((..((.....))...)))))......))--)))).-)))))))...-------..-...... ( -32.70) >DroEre_CAF1 19041 116 + 1 UAGCCACCGCUUGCUGCCCGCCAGCUGAGCCUGCCACGAUGGCAAUCUCACGUUGUCAAUCUGCAAACCACGUUUGACAUGCAUCA--GCGAA-AACGAUAUUAAAUUACAUA-CUUAUA .......((((.(.(((..(.((((((((..((((.....))))..)))).)))).)....(((((((...))))).)).))).))--)))..-...................-...... ( -25.40) >DroYak_CAF1 25842 111 + 1 UAGCCACCGCUUGCUGCCCGCCAGCUGAGCCUGCCACGAUGGCAAUCUCACGUUGUCUAUCUGCAAACCACAUUUGACAUACAUCAAAACGAA-AACGAUAUUA-------CA-CUUCUA ..((....))((((.......((((((((..((((.....))))..)))).)))).......))))......(((((......))))).....-..........-------..-...... ( -19.64) >DroAna_CAF1 41659 86 + 1 CAGCCAACGCUUGCUGCCAGCCAGUUGGGCCUGCCACGAAGGUAAUCUUACAUUGUCAAUCUGAAAGGAAUAUUAAAUAUAAUACA---------------------------------- ..(((...(((.((.....)).)))..))).((((.....))))...............(((....))).................---------------------------------- ( -14.20) >consensus UAGCCAUCGCUUGCUGCCCGCCAGCUGAGCCUGCCACGAUGGCAAUCUCACGUUGUCAAUCUGCAAGCCACAUUUGACAUAAAUCA__GCAAA_AAGGUUAUUA_______CA_CUUCUA .........(((((.......((((((((..((((.....))))..)))).)))).......)))))..................................................... (-17.55 = -17.22 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:49 2006