Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,263,852 – 13,263,958 |
Length | 106 |
Max. P | 0.695378 |
Location | 13,263,852 – 13,263,958 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.20 |
Mean single sequence MFE | -40.40 |
Consensus MFE | -22.68 |
Energy contribution | -24.00 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.14 |
Mean z-score | -2.05 |
Structure conservation index | 0.56 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13263852 106 + 27905053 CGGGACGAGCCGCAUCGAAAGGAG-UGGACUGGCCCCAA----AGUGGAUUGCAGCAAGAG---ACGCAGUGCGUGCCGCAUGCGAGCCACUUUCUAGUUGGCCCAAAACUCUG .(((.(.((((((..(....)..)-))).)).).)))((----(((((.(((((((..(..---((((...)))).).)).))))).)))))))..((((.......))))... ( -37.30) >DroSec_CAF1 16531 84 + 1 C----------------------G-UGGACUGGCCCCAA----AGUGGCUUGCAGCAAGCG---ACGCAGUGCGUGCCGCAUGCGAGCCACUUUCUAGUUGGCCCAAAACUCUG .----------------------.-(((.(..((...((----(((((((((((((..((.---((((...)))))).)).)))))))))))))...))..).)))........ ( -37.40) >DroSim_CAF1 16638 109 + 1 CGGGACGAGCCGCAUCGAAAGGAG-UGGACUGGCCCCAA----AGUGGCUUGCAGCAAGAGUGCGUGCAGUGCGUGCCGCAUGCGAGCCACUUUCUAGUUGGCCCAAAACUCUG .(((.(.((((((..(....)..)-))).)).).)))((----(((((((((((((..(.(..(((.....)))..)))).)))))))))))))..((((.......))))... ( -47.10) >DroEre_CAF1 17873 106 + 1 CGGGACGAGCCGCAUCGAAAGGAG-UAAACUGGACCCAA----AGUGGCUUGCAGCAAGAG---ACGCAGUGCGUGCCGCAUGCAAGUCACUUUCUAGUUGGCCCAAAACUCUG .(((.(((......)))...((.(-(.(((((((....(----(((((((((((((..(..---((((...)))).).)).))))))))))))))))))).))))....))).. ( -37.80) >DroYak_CAF1 24696 106 + 1 CGGGACGAGCCGCAUCGAAAGGAG-UGGACUGGACCCAA----AGUGGCUUGCAGCAAGAG---ACGCAGUGCGUGCCGCAUGCAAGCCACUUUCUAGUUGGCAUAAAACUCUG .(((.(.((((((..(....)..)-))).)).).)))((----(((((((((((((..(..---((((...)))).).)).)))))))))))))..((((.......))))... ( -43.80) >DroAna_CAF1 40484 102 + 1 CGGGACGAGU----UCGAUGGGAUCCAGACGGGAGUCUAGGGGAGUGGGCUG-----AAAA---AUGCAGUGCGUGCCGCAUGCAAGCCACUUUCUAGUUGGCCCAAAACUCGG .....(((((----(...((((..((((((....)))).((..(((((((((-----....---...))))(((((...)))))...)))))..))....)))))).)))))). ( -39.00) >consensus CGGGACGAGCCGCAUCGAAAGGAG_UGGACUGGACCCAA____AGUGGCUUGCAGCAAGAG___ACGCAGUGCGUGCCGCAUGCAAGCCACUUUCUAGUUGGCCCAAAACUCUG .(((.(((......)))..........((((((..........((((((((((.((..........)).(((((...)))))))))))))))..))))))..)))......... (-22.68 = -24.00 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:47 2006