| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,259,156 – 13,259,246 |
| Length | 90 |
| Max. P | 0.626980 |
| Location | 13,259,156 – 13,259,246 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 88.18 |
| Mean single sequence MFE | -30.29 |
| Consensus MFE | -25.09 |
| Energy contribution | -25.32 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13259156 90 + 27905053 UUU--UUGUUCGGGCGUGGCACGAUGUCGGCCCAAUAAGAAAACGACA-UCUGUGUGGGCGAGUGCGUUUUGUUUGCAUUCUAAUUGCCCUGU ...--......((((((.(((((((((((..............)))))-)).)))).).)(((((((.......))))))).....))))... ( -31.24) >DroSec_CAF1 11702 90 + 1 UUU--UUGUUCGGGCGUGGCACGAUGUCGGCCCAAUAAGAAAACACCA-ACUGUGUGGGCGAGUGCGUUUUGUUUGCAUUCUAAUUGCCCUGU (((--(((((.((((.((((.....)))))))))))))))).((((..-...))))(((((((((((.......))))))).....))))... ( -31.40) >DroSim_CAF1 11788 90 + 1 UUU--UUGUUCGGGCGUGGCACGAUGUCGGCCCAAUAAGAAAACGCCA-ACUGUGUGGGCGAGUGCGUUUUGUUUGCAUUCUAAUUGCCCUGU (((--(((((.((((.((((.....)))))))))))))))).((((..-...))))(((((((((((.......))))))).....))))... ( -31.00) >DroEre_CAF1 11405 89 + 1 UUU--UUGCUCGGGCGUGGCACGCUGUCGGCCCAAUAA-AAAACACCA-UCUGUGUGGGCGAGUGCGUUUUGUUUGCAUUCUAAUUGCCCUGU ...--..((((((((.((((.....)))))))).....-...((((..-...))))))))(((((((.......)))))))............ ( -27.90) >DroYak_CAF1 19873 89 + 1 UGU--UUGUUCGGGCGUGGCACGAUGUCGGCCCGAUAA-AAAACGCCA-UCUGUGUGGGCGAGUGCGUUUUGUUUGCAUUCUAAUUGCCCUGU .((--((..((((((.((((.....))))))))))...-.))))....-.......(((((((((((.......))))))).....))))... ( -31.50) >DroPer_CAF1 24301 86 + 1 UGGCAGUGUCUGGGCGUGGCAGCAUGUCAACCCAA-------ACUCUAGUCCGUGUGGGCGAAUGCGUUUUGUUGGCAUUCUAAUUGCCCUGU .((((((((.((((..((((.....)))).)))).-------))....((((....))))((((((.........))))))..)))))).... ( -28.70) >consensus UUU__UUGUUCGGGCGUGGCACGAUGUCGGCCCAAUAA_AAAACGCCA_UCUGUGUGGGCGAGUGCGUUUUGUUUGCAUUCUAAUUGCCCUGU ...........((((.((((.....)))))))).........((((......))))(((((((((((.......))))))).....))))... (-25.09 = -25.32 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:45 2006