Locus 5034

Sequence ID 3R_DroMel_CAF1
Location 13,258,909 – 13,259,001
Length 92
Max. P 0.916170
window8222

overview

Window 2

Location 13,258,909 – 13,259,001
Length 92
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 68.05
Mean single sequence MFE -19.25
Consensus MFE -2.79
Energy contribution -3.79
Covariance contribution 1.00
Combinations/Pair 1.29
Mean z-score -3.16
Structure conservation index 0.14
SVM decision value 1.11
SVM RNA-class probability 0.916170
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13258909 92 - 27905053
CCAACCUGCCAACCAAGCAAUAUCCACACAACAGGU-AUGUAC----AUACAUAUAUGCAUAUGUACGUAUCUGCAAUUUAUGCACACUC----GCAUGCA
................((.............(((((-((((((----(((..........))))))))))))))......((((......----)))))). ( -21.40)
>DroSec_CAF1 11459 88 - 1
CCAACCUGCCAACCGGGCAAUAUCCACACAACAGGU-AUGUAU--------AUAUAUGCAUAUGUACGUAUCUGCAAUUUAUGCACACUC----GCAUGCA
......((((.....))))............(((((-((((((--------((((....))))))))))))))).....(((((......----))))).. ( -25.10)
>DroSim_CAF1 11545 88 - 1
CCAACCUGCCAACCGGGCAAUAUCCACACAACAGGU-AUGUAU--------AUAUAUGCAUAUGUACGUAUCUGCAAUUUAUGCACACUC----GCAUGCA
......((((.....))))............(((((-((((((--------((((....))))))))))))))).....(((((......----))))).. ( -25.10)
>DroEre_CAF1 11176 74 - 1
CCAACCUGCCAACCGGGCAAUAUCCACACAACAGGU-A----------------------UAUGUACGUAUCUGCAAUUUAUGCACACUC----GCAUGCA
......((((.....))))............(((((-(----------------------(......))))))).....(((((......----))))).. ( -14.50)
>DroYak_CAF1 19642 77 - 1
CCAACCUGGCAACCUGGCAAUAUCCACACAACAGGU-A----------------------UAUGUACGUAUCUGCACUUUAUGCACACUG-CAUAUAUGCA
........((((((((...............)))))-(----------------------((((((.((...((((.....)))).))))-))))).))). ( -16.86)
>DroPer_CAF1 24002 92 - 1
CCGACCAGCCUCA-GCACCAGAC----CCAACAAUUUAUGCAUACUCACACUCACCUGCAUGUCGAUAUAUGCACAAUAU----ACAUGUAUAUAAAUAUG
.((((..((....-)).......----..........(((((..............))))))))).((((((((......----...))))))))...... ( -12.54)
>consensus
CCAACCUGCCAACCGGGCAAUAUCCACACAACAGGU_AUGUAU________AUAUAUGCAUAUGUACGUAUCUGCAAUUUAUGCACACUC____GCAUGCA
...(((((.......................)))))........................(((((.......((((.....)))).........))))).. ( -2.79 =  -3.79 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:44 2006