Locus 5031

Sequence ID 3R_DroMel_CAF1
Location 13,253,957 – 13,254,056
Length 99
Max. P 0.560696
window8218

overview

Window 8

Location 13,253,957 – 13,254,056
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 92.53
Mean single sequence MFE -26.38
Consensus MFE -23.28
Energy contribution -23.53
Covariance contribution 0.25
Combinations/Pair 1.08
Mean z-score -1.27
Structure conservation index 0.88
SVM decision value 0.05
SVM RNA-class probability 0.560696
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13253957 99 - 27905053
CGGUCCCGAUCUCGACUUCGU--UCGAUUU-GAGUUCGAUUUCGAUUGGGAUCUUUGAAUGCACUUCGCAUGCCGCUUUCCCAAUUGGCACCAACGCCCUGC
.(((.((((..((((.((((.--......)-))).))))..))((((((((.......((((.....)))).......)))))))))).))).......... ( -29.84)
>DroSec_CAF1 6523 99 - 1
CGGUCCCGAUCUCGACUUCGU--UCGAUUU-GAGUUCGAUUUCGAUUGGGAUCUUUGAAUGCACUUCGCAUGCCGCUUUCCAAAUUGGCACCAACGCCCUGC
.((((((((((((((.((((.--......)-))).))))....)))))))))).....((((.....))))((((.((....)).))))............. ( -27.30)
>DroSim_CAF1 6595 99 - 1
CGGUCCCGAUCUCUACUUCGU--UCGAUUU-GAGUUCGAUUUCGAUUGGGAUCUUUGAAUGCACUUCGCAUGCCGCUUUCCAGAUUGGCACCAACGCCCUGC
.(((.((((((......(((.--((((...-....))))...))).(((((.......((((.....))))......))))))))))).))).......... ( -26.52)
>DroEre_CAF1 6251 99 - 1
CGGUCCCGAUCUCUACUUUGU--UCGAUUU-GAGUUCGAUUUCGAUUGGGAUCUUUGAAUGCACUUCGCAUGCCGCUUUCCCAAUUGGCACCAACGCCCCGC
.((((((((.(((........--.......-))).))).....((((((((.......((((.....)))).......)))))))))).))).......... ( -25.30)
>DroYak_CAF1 13995 99 - 1
CGGUCCCGAUCUCGACUUCGU--UCGAUUU-GAGUUCGAUUUCGAUUGGGAUCUUUGAAUGCACUUCGCAUGCCGCUUUCUCAAUUGGCACCAACGCCCUGC
.((((((((((((((.((((.--......)-))).))))....)))))))))).....((((.....))))...............(((......))).... ( -27.20)
>DroAna_CAF1 30483 102 - 1
CAGUAACGAUCUCGAUCUCGUUUUCGAUUCCAAGUUCGAUUUCGAUUGGAAUCUUUGAAUGCACUUCACAUGCUGCUUUCCAAUUUGGCACUAACGCCCUGC
(((((..(((....))).(((((..((((((((..(((....)))))))))))...))))).........)))))...........(((......))).... ( -22.10)
>consensus
CGGUCCCGAUCUCGACUUCGU__UCGAUUU_GAGUUCGAUUUCGAUUGGGAUCUUUGAAUGCACUUCGCAUGCCGCUUUCCAAAUUGGCACCAACGCCCUGC
((((...((((((((..(((...((((........))))...))))))))))).....((((.....))))))))...........(((......))).... (-23.28 = -23.53 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:40 2006