Locus 5030

Sequence ID 3R_DroMel_CAF1
Location 13,250,745 – 13,250,863
Length 118
Max. P 0.972244
window8217

overview

Window 7

Location 13,250,745 – 13,250,863
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 91.05
Mean single sequence MFE -25.86
Consensus MFE -19.92
Energy contribution -20.20
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -2.61
Structure conservation index 0.77
SVM decision value 1.69
SVM RNA-class probability 0.972244
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13250745 118 - 27905053
AAUGAGCAAAAUACAAUUUAUGGCCGAUGGCAAUAUUUUGCAAAAAGUUCAAGGCUUGUAUUGUAUUACAUUGCACUGGAAUACAAUUUAUUUACGAGGCUUGACAACUUUU-AAAAAA
.....((((((((((.....))(((...)))..)))))))).(((((((((((.(((((((((((((.((......)).)))))))......)))))).)))))..))))))-...... ( -30.10)
>DroSec_CAF1 3216 118 - 1
AAUAAGCAAAAUAAUAUUUAUGGCCGCCGGCAAUAUUUUGCAAAAAGUUCAAGGCUUGUAUUGUAUUACAAUGCAUUAGAAUAACAUUUAUUUACGAGGCUUGACAACUUUU-AAAAUA
.....((((((((.........(((...)))..)))))))).(((((((((((.(((((((((.....))))))....(((((.....)))))..))).)))))..))))))-...... ( -26.30)
>DroSim_CAF1 3373 118 - 1
AAUAAGCAAAAUAAUAUUUAUGGCCGCCGGCAAUAUUUUGCAAAAAGUUCAAGGCUUGUAUUGUAUUACAAUGCAUUAGAAUAACAUUUAUUUACGAGGCUUGACAACUUUU-AAAAUA
.....((((((((.........(((...)))..)))))))).(((((((((((.(((((((((.....))))))....(((((.....)))))..))).)))))..))))))-...... ( -26.30)
>DroEre_CAF1 3206 117 - 1
AAUAAGCAAGAUACAAUUUAUUGCCGACGGCAAUAUUUUGCAAAAAGUUCAAGGCUUGUAUUGUAUUACAUUGCAUUAGAAUACAAUUUAUUUAUGAGGCCUGACAACUUUU--AAAUA
.....((((((((.......(((((...))))))))))))).(((((((..(((((((((.((.....)).)))....(((((.....)))))...))))))...)))))))--..... ( -26.41)
>DroYak_CAF1 8850 119 - 1
AAUAAGCAAAAUACAAUUUAUGGCUGACGGCAAUAUUUUGCAAAAAGUUCAAGGCUUGUAUCAUAUUACAUUGCAUUAGAAUACAAUUUAUUUAUAAGGCCUAACAACUUUUCAAAAAA
.....((((((((((.....))((.....))..)))))))).(((((((..(((((((((......))).........(((((.....)))))...))))))...)))))))....... ( -20.20)
>consensus
AAUAAGCAAAAUACAAUUUAUGGCCGACGGCAAUAUUUUGCAAAAAGUUCAAGGCUUGUAUUGUAUUACAUUGCAUUAGAAUACAAUUUAUUUACGAGGCUUGACAACUUUU_AAAAUA
.....((((((((.........(((...)))..)))))))).(((((((((((.(((((..((((......))))...(((((.....)))))))))).)))))..))))))....... (-19.92 = -20.20 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:39 2006