Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,249,640 – 13,249,740 |
Length | 100 |
Max. P | 0.917050 |
Location | 13,249,640 – 13,249,740 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 80.61 |
Mean single sequence MFE | -23.15 |
Consensus MFE | -13.46 |
Energy contribution | -13.32 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.14 |
Mean z-score | -2.76 |
Structure conservation index | 0.58 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13249640 100 + 27905053 AAUUGGUAAACUAAUACCGGCGACAUGCUAAUGUUUUGCUCUACAUUGAGACUGUGCGUAAACAAAAAUGUCACACGCCAUUAAA-----------------AAU-UACUAGCAUGUU ..((((((......)))))).(((((((((..(((((.(((......)))..((.((((..(((....)))...))))))...))-----------------)))-...))))))))) ( -23.80) >DroVir_CAF1 1389 99 + 1 AAAUAAGAAACUAAUAU-GCAAACAUGCUAAUGUUUUGCUCUACAUUUAGGCGGUGCGUAAACAAAAAUGUCACACGCCAUUAAA-----------------AUU-UAAUGGCAUGUU .................-...(((((((((((((........))))...((((((((((........))).))).))))......-----------------...-...))))))))) ( -23.30) >DroGri_CAF1 6402 99 + 1 AAAUAAGUAACUAAUAU-GCCAACAUGCUAAUGUUUUGCUCUACAUUGACGCUGUGCGUAAACAAAAAUGUCACACGACAUUAAA-----------------AUU-UAAUGGCAUGUU ............(((((-(((((((.((((((((........))))))..)))))...........((((((....))))))...-----------------...-...))))))))) ( -21.80) >DroSec_CAF1 2113 96 + 1 AAUUGGUA-ACUAAUACCG-CGACAUGCUA-UG-UUUGCUCUACAUUGA-GCUGUGCGUAAACAAAAAUGUCACACGCCAUUAAA-----------------AAUUUAAUAGCAUGUU ....((((-.....)))).-.(((((((((-(.-...((((......))-))((.((((..(((....)))...)))))).....-----------------......)))))))))) ( -26.40) >DroWil_CAF1 8771 114 + 1 AUAUUGAAAACUAAUGC---CGACAUGCUAAUGUUUUGCUCUACAUUGAAGCCAUGCGUUAACAAAAAUGUCACACGACAUUAAAAAAAGAUAAAAACAAAAAAU-UAAUAGCAUGUU .................---.(((((((((((((...((((......).)))...)))))).....((((((....)))))).......................-.....))))))) ( -20.50) >DroMoj_CAF1 1359 99 + 1 GAAUGAGCAACUAAUAU-GCGACCAUGUUAAUGUUUUGCUCUACAUUGAAGCUGUGCGUAAACAAAAAUGUCACACGCCAUUAAA-----------------AUC-UAAUGGCAUGUU ....((((((.((((((-(....))))))).....)))))).((((....(.(((((((........))).)))))(((((((..-----------------...-))))))))))). ( -23.10) >consensus AAAUGAGAAACUAAUAC_GCCAACAUGCUAAUGUUUUGCUCUACAUUGAAGCUGUGCGUAAACAAAAAUGUCACACGCCAUUAAA_________________AAU_UAAUAGCAUGUU .....................(((((((((.((((((((................))).)))))..((((........))))...........................))))))))) (-13.46 = -13.32 + -0.14)
Location | 13,249,640 – 13,249,740 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.61 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -13.43 |
Energy contribution | -13.93 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.07 |
Mean z-score | -2.62 |
Structure conservation index | 0.53 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13249640 100 - 27905053 AACAUGCUAGUA-AUU-----------------UUUAAUGGCGUGUGACAUUUUUGUUUACGCACAGUCUCAAUGUAGAGCAAAACAUUAGCAUGUCGCCGGUAUUAGUUUACCAAUU .((((((((((.-...-----------------.....(((((((.((((....))))))))).))(.(((......)))).....))))))))))....((((......)))).... ( -27.70) >DroVir_CAF1 1389 99 - 1 AACAUGCCAUUA-AAU-----------------UUUAAUGGCGUGUGACAUUUUUGUUUACGCACCGCCUAAAUGUAGAGCAAAACAUUAGCAUGUUUGC-AUAUUAGUUUCUUAUUU .(((((((((((-...-----------------..)))))))))))((((....))))...((...(((((....))).)).((((((....))))))))-................. ( -23.00) >DroGri_CAF1 6402 99 - 1 AACAUGCCAUUA-AAU-----------------UUUAAUGUCGUGUGACAUUUUUGUUUACGCACAGCGUCAAUGUAGAGCAAAACAUUAGCAUGUUGGC-AUAUUAGUUACUUAUUU ...((((((...-.((-----------------.(((((((..(((.(((((..((((.......))))..)))))...)))..))))))).))..))))-))............... ( -22.40) >DroSec_CAF1 2113 96 - 1 AACAUGCUAUUAAAUU-----------------UUUAAUGGCGUGUGACAUUUUUGUUUACGCACAGC-UCAAUGUAGAGCAAA-CA-UAGCAUGUCG-CGGUAUUAGU-UACCAAUU .(((((((((......-----------------.....(((((((.((((....))))))))).))((-((......))))...-.)-))))))))..-.((((.....-)))).... ( -29.80) >DroWil_CAF1 8771 114 - 1 AACAUGCUAUUA-AUUUUUUGUUUUUAUCUUUUUUUAAUGUCGUGUGACAUUUUUGUUAACGCAUGGCUUCAAUGUAGAGCAAAACAUUAGCAUGUCG---GCAUUAGUUUUCAAUAU .((((((((...-......((((((..(((.........(((((((((((....)))...))))))))........)))..)))))).))))))))..---................. ( -23.73) >DroMoj_CAF1 1359 99 - 1 AACAUGCCAUUA-GAU-----------------UUUAAUGGCGUGUGACAUUUUUGUUUACGCACAGCUUCAAUGUAGAGCAAAACAUUAACAUGGUCGC-AUAUUAGUUGCUCAUUC .(((((((((((-(..-----------------.))))))))((((((((....)).)))))).........)))).(((((....(((((.(((....)-)).)))))))))).... ( -25.20) >consensus AACAUGCCAUUA_AAU_________________UUUAAUGGCGUGUGACAUUUUUGUUUACGCACAGCCUCAAUGUAGAGCAAAACAUUAGCAUGUCGGC_AUAUUAGUUUCCCAUUU .(((((((((((.......................)))))))))))(((((((((((((..(((.........))).)))))))).......)))))..................... (-13.43 = -13.93 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:38 2006