| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,249,420 – 13,249,510 |
| Length | 90 |
| Max. P | 0.904057 |
| Location | 13,249,420 – 13,249,510 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 91.41 |
| Mean single sequence MFE | -27.11 |
| Consensus MFE | -22.35 |
| Energy contribution | -23.32 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.904057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13249420 90 - 27905053 GUAAACGCGCCUACAAUUUGGCCAUUUGAUUAGCCUCACCUCGUCAUGGUCGCCGGGGCCCCAAAUGGCCGAUCCAAUACGGCACAUAAA ......(.(((......(((((((((((....((((((((.......)))....)))))..)))))))))))........))).)..... ( -29.84) >DroSec_CAF1 1900 88 - 1 GUAAACGCGC-UACAAUUUGACCAUUUGAUUAGCCUCACCUCGUCAUGGUCGCCGG-GCCCCAAGUGGCCGAUCCAAUCCGGCACAUAAA ..........-........(((((..((((.((......)).)))))))))(((((-(((......))))(((...)))))))....... ( -23.10) >DroSim_CAF1 2024 90 - 1 GUAAACGCGCCUACAAUUUGGCCAUUUGAUUAGCCUCACCUCGUCAUGGUCGCCGGGGCCCCAAAUGGCCGAUCCAAUCCGGCACAUAAA ......(.(((......(((((((((((....((((((((.......)))....)))))..)))))))))))........))).)..... ( -29.84) >DroEre_CAF1 1861 90 - 1 GUAAACGCGCCUACAAUUUGGCCAUUUGAUUAGCCUCACCUCGUCAUGGUCGUCGGGGCCCCAAAUGGUCGAUCCAAUCCGGCACAUAAA ......(.(((......(((((((((((....((((((((.......)))....)))))..)))))))))))........))).)..... ( -27.14) >DroYak_CAF1 6887 90 - 1 GCAAACGCGCCUACAAUUUGGCCAUUUGAUUAGCCUCACCUCGUCAUGGUCGUCGGGGCCCCAAAUGGCCGAUCCAAUCCGGCACAUAAA ((....))(((......(((((((((((....((((((((.......)))....)))))..)))))))))))........)))....... ( -30.44) >DroAna_CAF1 25100 83 - 1 GUAAACGCGCCUACAAUUUGGCCAUUUGAUUAGCCUCACCUCGGCAAC-------AGACCUCAAAUGGCCAAUCCAAUCCAGCACAUAAA ......((.........((((((((((((...(((.......)))...-------.....)))))))))))).........))....... ( -22.27) >consensus GUAAACGCGCCUACAAUUUGGCCAUUUGAUUAGCCUCACCUCGUCAUGGUCGCCGGGGCCCCAAAUGGCCGAUCCAAUCCGGCACAUAAA ......(.(((......(((((((((((....((((((((.......)))....)))))..)))))))))))........))).)..... (-22.35 = -23.32 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:36 2006