Locus 5027

Sequence ID 3R_DroMel_CAF1
Location 13,241,502 – 13,241,622
Length 120
Max. P 0.527299
window8213

overview

Window 3

Location 13,241,502 – 13,241,622
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.17
Mean single sequence MFE -38.44
Consensus MFE -27.98
Energy contribution -27.86
Covariance contribution -0.12
Combinations/Pair 1.13
Mean z-score -1.60
Structure conservation index 0.73
SVM decision value -0.01
SVM RNA-class probability 0.527299
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13241502 120 + 27905053
GAUGGUCCUUGCCCAAGGAUCCUUUCUGCGCAGAUCGGAUAUUAUUAUCUUAGAAGCGAAGGUUCCCCAGAAAGGAUAUCUGCCUGUCGAAGAUGCUUCAGUGCAUCAAAUCGUUCCUAA
((((((((((....))))(((((((((((((.....(((((....))))).....)))..((...))))))))))))....))).)))...(((((......)))))............. ( -33.60)
>DroSec_CAF1 271325 120 + 1
GAUGGUCCUUGCCCAAGGAUCCUUUCUGCGCGGAUCGAAUAUUCUUAUAUCAGAAGCGGAGGUUCCCCAGAAAGGAUACCUGCCUGUCGAAGAUGCUUCAGUGCAUCAAAUCCUUCAUAG
((((((((((....))))((((((((((.(.(((((.....((((......)))).....))))).)))))))))))....))).)))...(((((......)))))............. ( -36.40)
>DroSim_CAF1 256819 120 + 1
GAUGGUCCUGGCCCAAGGAUCCUUUCUGCGCGGAUCGGAUAUUAUUAUAUCAGAAGCGGAGGUUCCCCAGAAAGGAUACCUGCCUGUCGAAGAUGCUUCAGUGCAUCAAGUCCUUCAUAA
((.((.(..(((...(((((((((((((.((...((.(((((....))))).)).))((.....)).)))))))))).)))))).......(((((......)))))..).)).)).... ( -39.60)
>DroEre_CAF1 260511 120 + 1
GAUGGUCCUUGCCCAAGGGUCCAUUCUGCACGGAUCGGAUAUAAUUGGGCCAGAAGUGGAGGUUCCCCAGGAAGGAUACCUGCCAGUCGAAGAUGCUUCAGUGCAUCCUUCCCUUCAUCA
(((((..((.((((((..((((..(((....)))..))))....)))))).))...((((((((((.......))).)))).)))...((((((((......)))).))))...))))). ( -41.50)
>DroYak_CAF1 270428 120 + 1
GAUGGUCCUUGCCCAAGGAUCCUUUUUGCACGGAUCUGAUAUUAUUGGCGCAGAAGCGGAGGUUCCCCAGGAAGGAUACCUGCCUGUUGAAGAUGCUUCAGUGCAUCACUCCCUUCAUCA
(((......(((((((((((((.........)))))).......)))).)))((((.((((.(((..((((.(((...))).))))..)))(((((......))))).))))))))))). ( -41.11)
>consensus
GAUGGUCCUUGCCCAAGGAUCCUUUCUGCGCGGAUCGGAUAUUAUUAUAUCAGAAGCGGAGGUUCCCCAGAAAGGAUACCUGCCUGUCGAAGAUGCUUCAGUGCAUCAAAUCCUUCAUAA
((((((((((....))))((((((((((...(((((........................)))))..))))))))))....))).)))...(((((......)))))............. (-27.98 = -27.86 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:35 2006