Locus 5024

Sequence ID 3R_DroMel_CAF1
Location 13,239,669 – 13,239,789
Length 120
Max. P 0.681829
window8210

overview

Window 0

Location 13,239,669 – 13,239,789
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.50
Mean single sequence MFE -37.32
Consensus MFE -31.54
Energy contribution -31.74
Covariance contribution 0.20
Combinations/Pair 1.13
Mean z-score -1.36
Structure conservation index 0.85
SVM decision value 0.31
SVM RNA-class probability 0.681829
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13239669 120 + 27905053
AUAUUUGCCUUUUGCUGUGUGUGGCUUUGAGCCAAGUUAGGGGUAACUGUUCAGGCGAAUGUCCGGAUACGGAGGAAGUUGUUUGGGCUCUUGGAGGAGGUUGCAAUGUUUUCCGGAAUA
....((((((((.(((.....((((.....))))))).))))))))..((((((((((.(.((((....)))).)...))))))))))(((.((((((.((....)).)))))))))... ( -37.40)
>DroSec_CAF1 269229 120 + 1
AUAUUUGCCUUUUGCUGUGUGUGGCUUUGAGCCAAGUUAGUGGUAACUGCUCAGGCGAAUGUCCGGAUACGGAGGAAGUUGUUUGGGCUCUCGGAGGAGGUUGCAAUGUUUUCCGGAAUA
....(((((....((((....((((.....))))...)))))))))..((((((((((.(.((((....)))).)...))))))))))((.(((((((.((....)).)))))))))... ( -40.20)
>DroSim_CAF1 254700 120 + 1
AUAUUUGCCUUUUGCUGUGUGUGGCUUUGAGCCAAGUUAGUGGUAACUGCUCAGGCGAAUGUCCGGAUACGGAGGAAGUUGUUUGGGCUCUCGGAGGAGGUUGCAAUGUUUUCCGGAAUA
....(((((....((((....((((.....))))...)))))))))..((((((((((.(.((((....)))).)...))))))))))((.(((((((.((....)).)))))))))... ( -40.20)
>DroEre_CAF1 258014 120 + 1
AUAUUUGCAUUUUGCUGUGUGUGGCUUUAAGCCUAGUUAGUGGUAACUGCUCAGGAAAAUGUCCCGACACGGAGGAAGUUGUUUGGGCUCUUGGAGGAGGUUGCAGUGUCUUCCGGAAUA
.((((((((((((.(((.((..(((.....))).(((((....))))))).))).))))))).......(((((((..((((..((.((((....)))).))))))..)))))))))))) ( -36.50)
>DroYak_CAF1 269019 120 + 1
AUUUUUACCUAUUGCUGUGCCUGGCUCUAAGCCAAGUUAGUGGUAAUUGCACAGGAGAAUGUCCCGAUACGGAGGAAGUUGUUUGGGCUCUGGGAGGAGGUUGCAAUGUUUUCCGGAAUA
.......(((((..(((.((.((((.....)))).)))))..)))........((((((((((((((.((((......)))))))))((((....))))......))))))))))).... ( -32.30)
>consensus
AUAUUUGCCUUUUGCUGUGUGUGGCUUUGAGCCAAGUUAGUGGUAACUGCUCAGGCGAAUGUCCGGAUACGGAGGAAGUUGUUUGGGCUCUCGGAGGAGGUUGCAAUGUUUUCCGGAAUA
((((((((((...((......((((.....))))(((((....)))))))..)))))))))).......(((((((.(((((..((.((((....)))).))))))).)))))))..... (-31.54 = -31.74 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:32 2006