Locus 5022

Sequence ID 3R_DroMel_CAF1
Location 13,237,786 – 13,237,906
Length 120
Max. P 0.508124
window8208

overview

Window 8

Location 13,237,786 – 13,237,906
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.00
Mean single sequence MFE -30.18
Consensus MFE -25.10
Energy contribution -25.34
Covariance contribution 0.24
Combinations/Pair 1.10
Mean z-score -1.29
Structure conservation index 0.83
SVM decision value -0.05
SVM RNA-class probability 0.508124
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13237786 120 - 27905053
CCAAAUCGCUGACCUCCAAUGAUGAACACGAUUUCGGGCAAACUAUCGAUCUCAGAACAGUUGAGCAAAUAUUCGUUAUUUGAGGUGGGCAAGCCACCAAGGAGACUAUUAAUUAUUAGG
((.....(((.(((((.(((((((((..((((...((.....))))))..(((((.....)))))......))))))))).))))).))).........((....))...........)) ( -30.50)
>DroSec_CAF1 266516 120 - 1
CCAAAUCGCUGACCUCCAAUGAUGAACACGAUUUCGGGCAAACUAUCGAUCUCAGAACAGUUGAGCAAAUAUUCGUUAUUUGAAGUGGGCAAACCGCCAAGGAGACUAUUAAUAAUUAGG
((.....(((.((.((.(((((((((..((((...((.....))))))..(((((.....)))))......))))))))).)).)).))).........((....))...........)) ( -24.00)
>DroSim_CAF1 251940 120 - 1
CCAAAUCGCUGACCUCCAAUGAUGAACACGAUUUCGGGCAAACUAUCGAUCUCAGAACAGUUGAGCAAAUAUUCGUUAUUUGAGGUGGGCAAACCGCCAAGGAGACUAUUAAUAAUUAGG
((.....(((.(((((.(((((((((..((((...((.....))))))..(((((.....)))))......))))))))).))))).))).........((....))...........)) ( -30.50)
>DroEre_CAF1 256162 120 - 1
CCAAAUCGCCGACCUCCAAUGAUGAACACAAUUUCGGGCAAACUAUCGAUUUCAGAACAGUUGAGCAAAUAUUCGUUGUUUGAGGUGGGCAAGCCGCCAAGAAGGCUAUUAAUUAUUAGG
((.....(((.(((((.((..(((((.......((((........)))).(((((.....)))))......)))))..)).))))).))).((((........))))...........)) ( -32.80)
>DroYak_CAF1 267042 120 - 1
CCAAAUCGCUGUCCACCAAUGAUGAACACAAUUUCGGGCAAACUAUCGAUUUCCGAACAAUUGAGCAAAUAUUCGUUAUUUGCGGUGGGCAAGCCGCCAAGGAGACUAUUUAUUAUUAGG
((.....((((((((((...........((((((((((.............)))))..))))).(((((((.....)))))))))))))).))).....((....))...........)) ( -33.12)
>consensus
CCAAAUCGCUGACCUCCAAUGAUGAACACGAUUUCGGGCAAACUAUCGAUCUCAGAACAGUUGAGCAAAUAUUCGUUAUUUGAGGUGGGCAAGCCGCCAAGGAGACUAUUAAUUAUUAGG
((.....(((.(((((.(((((((((.......((((........)))).(((((.....)))))......))))))))).))))).))).........((....))...........)) (-25.10 = -25.34 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:30 2006