Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,885,113 – 1,885,206 |
Length | 93 |
Max. P | 0.633156 |
Location | 1,885,113 – 1,885,206 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 80.28 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -17.43 |
Energy contribution | -18.35 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.16 |
Mean z-score | -1.24 |
Structure conservation index | 0.74 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1885113 93 - 27905053 -----GGAAAGCGGCAAAUGCAAAAGCAAAGUUAGGGUUAAACUCUUUUGUGGCAUUAGCGAAACCAGAGAAGGGAAACUCCAUCGUGUCGCGACUGA -----.....((((((..(((....)))......(((((...(((((((.(((...........))).))))))).))).))....))))))...... ( -24.90) >DroPse_CAF1 33738 96 - 1 UGGGCUGAAUGCGGCAAAUGCAAAAGCAAAGUUUCACCUAAACUCUUUUGUGGCUUCCAUGCUAUCUA--UAGGGGUACAGGGACGUGUCGCGACGAA .........(((((((..(((....))).....((.(((..((((((..(((((......)))))...--.))))))..)))))..)))))))..... ( -25.80) >DroSec_CAF1 43142 93 - 1 -----GGAAAGCGGCAAAUGCAAAAGCAAAGUUAGGACUAAACUCUUUUGUGGCAUCGGAGAAACCAGAGAAGGGAAACUCCAUCGUGUCGCGACUGA -----.....((((((..(((....)))......(((.....(((((((.(((..((...))..))).)))))))....)))....))))))...... ( -24.80) >DroSim_CAF1 43772 93 - 1 -----GGAAAGCGGCAAAUGCAAAAGCAAAGUUAGGACUAAACUCUUUUGUGGCAUCGGAGAAACCAGAGAAGGGAAACUCCAUCGUGUCGCGACUGA -----.....((((((..(((....)))......(((.....(((((((.(((..((...))..))).)))))))....)))....))))))...... ( -24.80) >DroEre_CAF1 43865 93 - 1 -----GGAAAGUGGCAAAUGCAAAAGCAAAGUUUCGGCUAAACUCUUCUAUGGCAUCCGAGAAACCAGAGAAGGGAAACACCAUUGUGUCGCGACUGA -----.....((((((..(((....))).......((.....(((((((.(((..((...))..))).))))))).....))....))))))...... ( -22.20) >DroYak_CAF1 49035 85 - 1 -------------GCAAAUGCAAAAGCAAAGAUUCGGGAAAACUCUUCUACGGCAUCCGAGAAACCAGAGAAGGGAAACACCAUCGUGUCGCGACUGA -------------((...(((....)))..(((.(((.....(((((((.(((...))))))....))))..((......)).))).)))))...... ( -17.90) >consensus _____GGAAAGCGGCAAAUGCAAAAGCAAAGUUACGGCUAAACUCUUUUGUGGCAUCCGAGAAACCAGAGAAGGGAAACACCAUCGUGUCGCGACUGA ..........((((((..(((....)))..............(((((((.(((...........))).)))))))...........))))))...... (-17.43 = -18.35 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:43 2006