| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,219,396 – 13,219,498 |
| Length | 102 |
| Max. P | 0.847253 |
| Location | 13,219,396 – 13,219,498 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 78.25 |
| Mean single sequence MFE | -28.48 |
| Consensus MFE | -19.83 |
| Energy contribution | -20.42 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.847253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13219396 102 - 27905053 GAAUGUUUUGGCU-----CAUUUGAAGAUGGAUCCUAGCGACAAAAGCUAUCAGCCAUCGCUGGAUGCCUAUGUGAGGCGUCAUCCAGCUGCCAUCAAUUGGGUAAA ..........(((-----((.((((.(((((....((((.......))))....)))))(((((((((((.....))))...))))))).....)))).)))))... ( -37.00) >DroSec_CAF1 247325 105 - 1 GAAUAUUUCGGAUAUA--UAUUUGUAGAUGGAUCCGAGCGACAAAAGCUAUCAGCCAUCGCUGGAUGCCUAUGUGAGGCGUCAUCCAGCUGCCAUCAACUGGGUAAA .......((((((...--((((....)))).))))))((.......))...((((....))))(((((((.....)))))))((((((.((....)).))))))... ( -31.50) >DroSim_CAF1 233761 105 - 1 GAAUAUUUCGGAUAUA--UAUUUGUAGAUGGAUCCCAGCGACAAAAGCUAUCAGCCAUCGCUGGAUGCCUAUGUGAGGCGUCAUCCAGCUGCCAUCAAUUGGGUAAA ((((((.........)--)))))...(((((.....(((.......))).....)))))(((((((((((.....))))...)))))))((((........)))).. ( -29.80) >DroEre_CAF1 237643 99 - 1 AAAU----CGGAUU----AAUUCGUAGAUGGAUCCCAGCGACACAAGCUAUCAGCCAUCGUUGGAUGCCUAUGUCAAACGUCAUCCAGCUGCCAUCAAUUGGGUAAA ..((----(.((((----.((..((((((((.....(((.......))).....)))))((((((((...(((.....)))))))))))))).)).)))).)))... ( -25.20) >DroWil_CAF1 236646 106 - 1 -AAUAUUUGAACUUUACUUUUCCACAGAUGGUAGAAGAUGAUGCUAGCUACAAGCCCGCACUUGAUGCAUUCCUAAAACGUCAUCCAGCAGGAACCAAUUGGCUAAA -...............((((((((....))).))))).......((((((....((.((...(((((...........)))))....)).)).......)))))).. ( -17.00) >DroYak_CAF1 248444 101 - 1 AAAUG--UUGGAUU----UAUUCGCAGAUGGAUCCCAGCGACAGAAGCUAUCAGCCAUCGUUGGAUGCCUAUGUGAAACGUCAUCCAGCUGCCAUCAAUUGGGUAAA ....(--((((((.----..((((((...((...(((((((.....((.....))..)))))))...))..)))))).....)))))))((((........)))).. ( -30.40) >consensus GAAUAUUUCGGAUU____UAUUCGUAGAUGGAUCCCAGCGACAAAAGCUAUCAGCCAUCGCUGGAUGCCUAUGUGAAACGUCAUCCAGCUGCCAUCAAUUGGGUAAA ..........................(((((.....(((.......))).....)))))((((((((...(((.....)))))))))))((((........)))).. (-19.83 = -20.42 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:18 2006