Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,211,538 – 13,211,661 |
Length | 123 |
Max. P | 0.755405 |
Location | 13,211,538 – 13,211,643 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 84.04 |
Mean single sequence MFE | -33.20 |
Consensus MFE | -22.80 |
Energy contribution | -23.43 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.17 |
Mean z-score | -1.87 |
Structure conservation index | 0.69 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13211538 105 - 27905053 UUCCAAGCAGUGUUGUAUUCGAAUCAGCUGAGUAUAACGAAUGGGAAAUGUGUUGAAAAGGU-UUAAGUCGUGGCCUUUCGCCAGCUGGUCACACCAAUUUGCUGC ......(((((((((((((((.......))))))))))((((.((...((((..((((.(((-(........))))))))(((....))))))))).))))))))) ( -27.40) >DroSec_CAF1 239433 105 - 1 UUCCAAGCAGUGUUGUAUUCGGAUCAGCUGAGUAUAACGGUUGGGUAAGGUGCUGAAAAGGU-UUAAUUCGUGGCCUUUUGCCAGCUGGUCACACCAAUUUGCUGC ......((((((((((((((((.....)))))))))))((((((((.....(((((((((((-(........))))))))..)))).....)).)))))).))))) ( -36.10) >DroSim_CAF1 225826 105 - 1 UUCCAAGCAGUGUUGUAUUCGGAUCAGCUGAGUAUAACGGUUGGGUAAUGUGCUGAGAAGGU-UUGAUUCGUGGGCUUUUGCCAGCUGGUCACACCAAUUUGCUGC ......((((((((((((((((.....)))))))))))((((((((.((..((((.((((((-..(.....)..))))))..))))..)).)).)))))).))))) ( -36.10) >DroYak_CAF1 240454 94 - 1 UUGCAACCAGUGUUGUAUUCGGAUCAGCUGUGUGUAAUGGCUGG------------AAAGGUGGUAAUUCAUGGCCUUUUGCCAGCUGGUCACACGAAUCUGCUGG .((((((....)))))).......((((((((((...(((((((------------.(((((.((.....)).)))))...)))))))..)))))).....)))). ( -33.20) >consensus UUCCAAGCAGUGUUGUAUUCGGAUCAGCUGAGUAUAACGGUUGGGUAAUGUGCUGAAAAGGU_UUAAUUCGUGGCCUUUUGCCAGCUGGUCACACCAAUUUGCUGC ......((((((((((((((((.....)))))))))))((((((...............((.......))((((((...........)))))).)))))).))))) (-22.80 = -23.43 + 0.63)
Location | 13,211,565 – 13,211,661 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 82.56 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -17.36 |
Energy contribution | -17.93 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.67 |
Structure conservation index | 0.64 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13211565 96 - 27905053 UCGAGGGCUGGAAAGCGAUUCCAAGCAGUGUUGUAUUCGAAUCAGCUGAGUAUAACGAAUGGGAAAUGUGUUGAAAAGGU-UUAAGUCGUGGCCUUU ((((.((((....)))..((((......(((((((((((.......)))))))))))....))))...).))))((((((-(........))))))) ( -25.20) >DroSec_CAF1 239460 96 - 1 UCGAGGGCUGGAAAGCGAUUCCAAGCAGUGUUGUAUUCGGAUCAGCUGAGUAUAACGGUUGGGUAAGGUGCUGAAAAGGU-UUAAUUCGUGGCCUUU ..(((((((.....((((.(((((.(...(((((((((((.....)))))))))))).))))).......((....))..-.....))))))))))) ( -27.80) >DroSim_CAF1 225853 96 - 1 UCGAGGGCUGGAAAGCUGUUCCAAGCAGUGUUGUAUUCGGAUCAGCUGAGUAUAACGGUUGGGUAAUGUGCUGAGAAGGU-UUGAUUCGUGGGCUUU ..((.((((....)))).))((((.(...(((((((((((.....)))))))))))).)))).......(((.((((...-....))).).)))... ( -26.30) >DroYak_CAF1 240481 85 - 1 GCGAGGGCUGGAAAGCUUUUGCAACCAGUGUUGUAUUCGGAUCAGCUGUGUGUAAUGGCUGG------------AAAGGUGGUAAUUCAUGGCCUUU (((((((((....)))))))))..((((((((((((.(((.....))).))))))).)))))------------((((((.((.....)).)))))) ( -29.90) >consensus UCGAGGGCUGGAAAGCGAUUCCAAGCAGUGUUGUAUUCGGAUCAGCUGAGUAUAACGGUUGGGUAAUGUGCUGAAAAGGU_UUAAUUCGUGGCCUUU ..(((((((((((.....))))...(((((((((((((((.....))))))))))).)))).............................))))))) (-17.36 = -17.93 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:16 2006