| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,209,642 – 13,209,736 |
| Length | 94 |
| Max. P | 0.578568 |
| Location | 13,209,642 – 13,209,736 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.18 |
| Mean single sequence MFE | -27.07 |
| Consensus MFE | -10.66 |
| Energy contribution | -9.86 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13209642 94 + 27905053 A---AGCAAAA--UUAUGUCCAUGU-----CUGUCGCCGUUUUGUUUUGGUUACGGACUUCGCCGUGCUGCCAAUUAAAAGCAGCCGCUUGCAUAAUUUCCGCU------- .---(((.(((--((((((....((-----((((.((((........)))).))))))...((.(.(((((.........))))))))..)))))))))..)))------- ( -29.90) >DroVir_CAF1 239999 105 + 1 U------AUAAGUGUGUGUGUGUGUUUGUAGUGUUGCCGUUUUGUUUUGGUUACGGACUUCUCAUUGCUGCCAAUUAAAAGUGGCCGCUUGCAUAAUUUCCGUAGCUCGGC (------(((((..(......)..)))))).....((((.........(((((((((.........((.((((........)))).))..........))))))))))))) ( -26.31) >DroPse_CAF1 231246 96 + 1 A------AAAA--UUAUGUUCAUGU-----CUGCGGCCGUUUUGUUUUGGUUACGGACUUCGCCGUGCUGCCAAUUAAAAAUAGCCGCUUGCAUAAUUUCCUCUCAAC-G- .------.(((--((((((......-----..(((((..((((...((((((((((......)))))..)))))...))))..)))))..))))))))).........-.- ( -29.80) >DroMoj_CAF1 247496 88 + 1 U------GUAUCGGUGUGUGUGUGU-----GUGUCGCAGUUUUGUUUUGGUUACGGACUUCGCAUUGCUGUCAAUUAAACGUGGCUGCUUGCAUAAUCU------------ .------...............(((-----(((..(((((..(((((.((((((((.(........))))).)))))))))..))))).))))))....------------ ( -18.70) >DroAna_CAF1 224069 97 + 1 AGCAACCAAAA--UUAUGUUCGCGG-----CUGUCGCCGUUUUGUUUUGGUUACGGACUUCGCCAUGCUGCCAAUUAAAAAUAGCCGCUUGCAUAAUUUCCGCU------- (((.....(((--((((((..((((-----((((.....(((((..(((((...((......)).....))))).)))))))))))))..)))))))))..)))------- ( -27.90) >DroPer_CAF1 297985 96 + 1 A------AAAA--UUAUGUUCAUGU-----CUGCGGCCGUUUUGUUUUGGUUACGGACUUCGCCGUGCUGCCAAUUAAAAAUAGCCGCUUGCAUAAUUUCCUCUCUAC-G- .------.(((--((((((......-----..(((((..((((...((((((((((......)))))..)))))...))))..)))))..))))))))).........-.- ( -29.80) >consensus A______AAAA__UUAUGUUCAUGU_____CUGUCGCCGUUUUGUUUUGGUUACGGACUUCGCCGUGCUGCCAAUUAAAAAUAGCCGCUUGCAUAAUUUCCGCU_______ ..............(((((.............((.((.(((((...((((...(((.(........))))))))...))))).)).))..)))))................ (-10.66 = -9.86 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:14 2006