Locus 5010

Sequence ID 3R_DroMel_CAF1
Location 13,209,200 – 13,209,320
Length 120
Max. P 0.616127
window8191

overview

Window 1

Location 13,209,200 – 13,209,320
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.08
Mean single sequence MFE -26.46
Consensus MFE -18.09
Energy contribution -19.38
Covariance contribution 1.29
Combinations/Pair 1.09
Mean z-score -1.82
Structure conservation index 0.68
SVM decision value 0.17
SVM RNA-class probability 0.616127
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13209200 120 - 27905053
AUUAAUUAGUAUAACUCUAUUGGUUUGGACAUUCUUCGGCUUUCGUGUUGAUGACAAUCUUUUAAAUGACAGUAGCAUAUUUGUGUUGCAUAACAGGUAUCGCAACAAUGGAGAAUAUUU
..............(((((((((((((((...((.(((((......))))).))......))))))).......((((((((((........)))))))).))..))))))))....... ( -25.10)
>DroSec_CAF1 237143 120 - 1
AUUAAUUAGUAUAACUCUAUUAGUUGGGACAUUCUUCGGUUUUCGUGUUGAUGCCAAUCAUUUAAAUGACAGUAGCAUAUUUGUGUUGCAUAACAGGUAUCGAAACAAUGGAGAAUAUUU
.((((((((((......))))))))))...((((((((......((.((((((((..((((....))))..(((((((....)))))))......)))))))).))..)))))))).... ( -30.10)
>DroSim_CAF1 223601 120 - 1
AUUAAUUAGUAUAACUCUAUUAGUUUGGACAUUCUUCGGUUUUCGUGUUGAUGCCAAUCAUUUAAAUGACAGUAGCAUAUUUGUGUUGCAUAACAGGUAUCGAAACAAUGGAGAAUAUUU
..............(((((((.((((.(((((.(....).....)))))((((((..((((....))))..(((((((....)))))))......)))))).)))))))))))....... ( -29.10)
>DroEre_CAF1 227500 114 - 1
--UCUUUAGUA----UCUAUUAGUUUGGACAUUCUUCGGGUUUCGUGUUGAUGCUAAUCAUUUAAGUGACAGUAGCAUAUUCGUGUUGCAUAACAGGUAUCGAAACAAUGGAAAAUAUUU
--.........----((((((.((((.(((((((....))....)))))((((((..((((....))))..(((((((....)))))))......)))))).))))))))))........ ( -24.70)
>DroYak_CAF1 238102 98 - 1
AUUAUUUAGUAUAACUCUAUUAGUUUGG----------------------AUGCUUAUCAUUUAAAUGGCGGUAGCAUAUUUGUGUUGCAUAACAGGUAUCGAAACAAUGGAAAAUAUUU
.......(((((...((((((.((((.(----------------------((((((.((((....))))..(((((((....))))))).....))))))).))))))))))..))))). ( -23.30)
>consensus
AUUAAUUAGUAUAACUCUAUUAGUUUGGACAUUCUUCGGUUUUCGUGUUGAUGCCAAUCAUUUAAAUGACAGUAGCAUAUUUGUGUUGCAUAACAGGUAUCGAAACAAUGGAGAAUAUUU
..............(((((((.((((.(((((.(....).....)))))((((((..((((....))))..(((((((....)))))))......)))))).)))))))))))....... (-18.09 = -19.38 +   1.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:13 2006