Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,884,308 – 1,884,413 |
Length | 105 |
Max. P | 0.696160 |
Location | 1,884,308 – 1,884,413 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -24.95 |
Consensus MFE | -15.97 |
Energy contribution | -15.92 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.06 |
Mean z-score | -1.52 |
Structure conservation index | 0.64 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696160 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1884308 105 - 27905053 CUUCCAGAUAAAAAGGUGAUUGACGAAGCGAAAGCAAAAGUCAUGGUCGAA-CUUCCACUUAGCA-AUGCAGUUGUCGUUCACA-G-AAAAGGACCAACGACGAUGUCG .....................((((..((....))....(((.((((((((-(..(.(((((...-.)).))).)..)))).(.-.-....))))))..)))..)))). ( -22.90) >DroVir_CAF1 43777 105 - 1 CUGCAAGAUAAAAAGGUGAUUGACGAACCGAAAGCAAAAGUCAUGGCCAAAGCUUUGGCUCAGCAAAUGCAUUUGUCGUUUGCCCGUAAAACUAGUC---AAAAUGUG- ..(((.........(((.((.(((....(....).....))))).))).....(((((((..((((((((....).)))))))..(.....).))))---))).))).- ( -21.20) >DroPse_CAF1 32792 95 - 1 GUCCCAGAUAAAAAGGUGAUUGACGAAGCGAAAGCAAAAGUCAUGGCCAAA-AUUCCACUUAGCA-AUGCAGUUGUCGUUGACU-G-AGAAAGAAAGGG---------- ..(((.........(((.((.(((...((....))....))))).)))...-......(((((((-((((....).))))).))-)-)).......)))---------- ( -26.80) >DroEre_CAF1 43073 101 - 1 CUUCCAGAUAAAAAGGUGAUUGACGAAGCGAAAGCAAAAGUCAUGGUCGAA-CUUCCACUUAGCA-AUGCAGUUGUCGUUCGCA---AAAAGGACGAAC---GAUGUGG ................((((((((...((....))....))))..))))..-...((((...((.-..))....(((((((((.---.....).)))))---))))))) ( -24.00) >DroAna_CAF1 31629 102 - 1 CUUUCAGAUAAAAAGGUGAUUGACGAAGCGAAAGCAAAAGUCAUGGCCGAA-AUUCCACUUAGCA-AUGCAGUUGUCGUUUUCG-G-AGAAGGACGAAAGUCC---UGC .((((.........(((.((.(((...((....))....))))).)))(((-(..(.(((((...-.)).))).)....)))).-)-)))(((((....))))---).. ( -28.00) >DroPer_CAF1 33112 95 - 1 GUCCCAGAUAAAAAGGUGAUUGACGAAGCGAAAGCAAAAGUCAUGGCCAAA-AUUCCACUUAGCA-AUGCAGUUGUCGUUGACU-G-AGAAAGAAAGGG---------- ..(((.........(((.((.(((...((....))....))))).)))...-......(((((((-((((....).))))).))-)-)).......)))---------- ( -26.80) >consensus CUUCCAGAUAAAAAGGUGAUUGACGAAGCGAAAGCAAAAGUCAUGGCCAAA_AUUCCACUUAGCA_AUGCAGUUGUCGUUCACA_G_AAAAGGACAAAC_______UG_ ......(((((...(((.((.(((...((....))....))))).)))..............((....))..)))))................................ (-15.97 = -15.92 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:42 2006