Locus 5005

Sequence ID 3R_DroMel_CAF1
Location 13,188,193 – 13,188,283
Length 90
Max. P 0.789552
window8182

overview

Window 2

Location 13,188,193 – 13,188,283
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -22.78
Consensus MFE -16.18
Energy contribution -15.86
Covariance contribution -0.32
Combinations/Pair 1.16
Mean z-score -2.11
Structure conservation index 0.71
SVM decision value 0.58
SVM RNA-class probability 0.789552
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13188193 90 - 27905053
UUAAGUAGCCAUUAGGUGGCUGAGUGCAAAGUUCGAUGGCUAAGAGCUGAGAUUAUGAGCGCUGUGAAGUGCUCGUGAAAAAUUAUUCAU
.....((((((((..((.((.....))...))..)))))))).(((.(((..(((((((((((....)))))))))))....)))))).. ( -28.70)
>DroSec_CAF1 216054 90 - 1
UUAAGUAGCCAUUAGGUGGUUGAGUGCAAAGUUCGAUGGCUAAGAGCUGAGAUUAUAAGCGCUGUGAAGUGCUCGUGAAAAAUAAUUCAU
.....((((((((.((...(((....)))...))))))))))..........(((..((((((....))))))..)))............ ( -21.60)
>DroSim_CAF1 202130 90 - 1
UUAAGUAGCCAUUAGGUGGCUGAGUGCAAAGUUCGAUGGCUAAGAGCUGAGAUUAUAAGCGCUGUGAAGUGCUCGUGAAAAAUUAUUCAU
.....((((((((..((.((.....))...))..)))))))).(((.(((..(((..((((((....))))))..)))....)))))).. ( -23.60)
>DroEre_CAF1 206789 74 - 1
UUAAGUAGCCAUUAGGUGGUUGAGUGCAAA---------------GUUGAGAUUAUAAGCGCUUUGAAGUGCUCGUCAA-AAAUAUGCAU
.....(((((((...))))))).(((((..---------------.((..(((....((((((....)))))).)))..-))...))))) ( -16.90)
>DroYak_CAF1 215650 90 - 1
UUAAGUAGCCAUUAGGUGGUUGAGUGCAAAGUUCGAUGGCGAAAAGUUGAGAUUACAAGCGCUAUGAAGUGCUCGUAAAAAAAUAUGCAU
.....(((((((...))))))).(((((...((((((........)))))).((((.((((((....)))))).)))).......))))) ( -23.10)
>consensus
UUAAGUAGCCAUUAGGUGGUUGAGUGCAAAGUUCGAUGGCUAAGAGCUGAGAUUAUAAGCGCUGUGAAGUGCUCGUGAAAAAUUAUUCAU
.((..(((((((...)))))))..))..........................((((.((((((....)))))).))))............ (-16.18 = -15.86 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:04 2006