Locus 5004

Sequence ID 3R_DroMel_CAF1
Location 13,182,579 – 13,182,674
Length 95
Max. P 0.896109
window8181

overview

Window 1

Location 13,182,579 – 13,182,674
Length 95
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 86.04
Mean single sequence MFE -29.72
Consensus MFE -24.49
Energy contribution -25.60
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -2.58
Structure conservation index 0.82
SVM decision value 0.99
SVM RNA-class probability 0.896109
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13182579 95 + 27905053
CGCAAAUUAGUGUUGCAUAACUCCAGGCGCUGCAAGUGAAAUAUUUGCACAUUUGCGCAAGCAAGCCACCAAGUUGUUGCAGACACAUGC-UCGCU-------
.(((.....(((((((((((((...((((.((((((((...)))))))))..((((....)))))))....))))).)))).)))).)))-.....------- ( -30.10)
>DroPse_CAF1 201011 103 + 1
UGCAAAUUAGUGUAGCAUAACUUGAGGCACUGCAAGUGAAAUAUUUGCAAAUUUGCGAAAGCAAGCCGCCAAGUUAUUCCACCAACGAGUAUCUAUGUGUGUG
((((......))))..((((((((.(((..((((((((...))))))))...((((....)))))))..))))))))..(((((...((...))...)).))) ( -28.30)
>DroSim_CAF1 196541 95 + 1
CGCAAAUUAGUGUUGCAUAACUUCAGGCGCUGCAAGUGAAAUAUUUGCACAUUUGCGCAAGCAAGCCACCAAGUUGUUGCAGACACAUGC-UCGCU-------
.(((.....((((((((((((((..((((.((((((((...)))))))))..((((....)))))))...)))))).)))).)))).)))-.....------- ( -31.40)
>DroEre_CAF1 201346 95 + 1
CGCAAAUUAGUGUUGCAUAACUCCAGGCGCUGCAAGUGAAAUAUUUGCACAUUUGCGCAAGCAAGCCACCAAGUUGUUGCAGACACAUGC-UCGCU-------
.(((.....(((((((((((((...((((.((((((((...)))))))))..((((....)))))))....))))).)))).)))).)))-.....------- ( -30.10)
>DroYak_CAF1 209970 95 + 1
CGCAAAUUAGUGUUGCAUAACUCCAGGCGCUGCAAGUGAAAUAUUUGCACAUUUGCGCAAGCAAGCCACCAAGUUGUUGCAGACACAUGC-UCGCU-------
.(((.....(((((((((((((...((((.((((((((...)))))))))..((((....)))))))....))))).)))).)))).)))-.....------- ( -30.10)
>DroPer_CAF1 267752 103 + 1
UGCAAAUUAGUGUAGCAUAACUUGAGGCACUGCAAGUGAAAUAUUUGCAAAUUUGCGAAAGCAAGCCGCCAAGUUAUUCCACCAACGAGUAUCUAUGUGUGUG
((((......))))..((((((((.(((..((((((((...))))))))...((((....)))))))..))))))))..(((((...((...))...)).))) ( -28.30)
>consensus
CGCAAAUUAGUGUUGCAUAACUCCAGGCGCUGCAAGUGAAAUAUUUGCACAUUUGCGCAAGCAAGCCACCAAGUUGUUGCAGACACAUGC_UCGCU_______
.........(((((((((((((...(((..((((((((...))))))))...((((....)))))))....))))).)))).))))................. (-24.49 = -25.60 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:03 2006