Locus 5002

Sequence ID 3R_DroMel_CAF1
Location 13,181,564 – 13,181,655
Length 91
Max. P 0.614557
window8178

overview

Window 8

Location 13,181,564 – 13,181,655
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 96.92
Mean single sequence MFE -14.04
Consensus MFE -12.08
Energy contribution -11.84
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.40
Structure conservation index 0.86
SVM decision value 0.16
SVM RNA-class probability 0.614557
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13181564 91 + 27905053
AUUCCAAAAUGUAUGCACAACCCAUUGACCUAAAAACACAGUGGCACUCUGUGAAAUAUACGCAAAGGUUACACGCAAAAUGCAUAAGAAA
...........(((((((((....))).............(((((.((.((((.......)))).)))))))........))))))..... ( -14.50)
>DroSec_CAF1 209489 91 + 1
AUUCCAAAAUGUAUGCACAACCCAUUGACCUAAAAACAAAGUGGCACUCUGUGAAAUAUACGCAAAGGUUACACGCAAAAUGCAUAAGAAA
...........(((((((((....))).............(((((.((.((((.......)))).)))))))........))))))..... ( -14.50)
>DroSim_CAF1 195538 91 + 1
AUUCCAAAAUGUAUGCACAACCCAUUGACCUAAAAACACAGUGGCACUCUGUGAAAUAUACGCAAAGGUUACACGCAAAAUGCAUAAGAAA
...........(((((((((....))).............(((((.((.((((.......)))).)))))))........))))))..... ( -14.50)
>DroEre_CAF1 200344 91 + 1
AUUCCAAAAUGUAUGCACAACCCAUUGACCUAAAAACACGGUGGAACUCUGUGAAAUAUACGCAAAAGUUACACGCAAAAUGCAUAAGAAA
...........((((((....((((((...........))))))((((.((((.......))))..))))..........))))))..... ( -14.00)
>DroYak_CAF1 208935 91 + 1
AUUCCAAAAUGUAUGCACAACCCAUUGACCUAAAAAGACGGUGGCACUCUGUGAAAUAUACGCAAAAGUUACACGCAAAAUGCAUAAAAAA
...........(((((((((....))).........(.(((((((....((((.......))))...))))).)))....))))))..... ( -12.70)
>consensus
AUUCCAAAAUGUAUGCACAACCCAUUGACCUAAAAACACAGUGGCACUCUGUGAAAUAUACGCAAAGGUUACACGCAAAAUGCAUAAGAAA
...........(((((((((....))).............(((..(((.((((.......))))..)))..)))......))))))..... (-12.08 = -11.84 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:01 2006