Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,179,094 – 13,179,220 |
Length | 126 |
Max. P | 0.974464 |
Location | 13,179,094 – 13,179,194 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 95.40 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -23.07 |
Energy contribution | -22.68 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.13 |
Mean z-score | -1.32 |
Structure conservation index | 0.96 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13179094 100 - 27905053 CUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGUGAUUAGAUUGAUUGGGACUCAUUUGCAUGAUA ....((((...(((((((((((((..((...))....)))))))))))))...))))(..((((((.(((((.....))))).))......))))..).. ( -24.10) >DroSec_CAF1 206961 100 - 1 CUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGUGAUUAGAUUGAUUGGGACUCAUUUGCAUGAUA ....((((...(((((((((((((..((...))....)))))))))))))...))))(..((((((.(((((.....))))).))......))))..).. ( -24.10) >DroSim_CAF1 193011 100 - 1 CUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGUGAUUAGAUUGAUUGGGACUCAUUUGCAUGAUA ....((((...(((((((((((((..((...))....)))))))))))))...))))(..((((((.(((((.....))))).))......))))..).. ( -24.10) >DroEre_CAF1 197876 100 - 1 CUUCCUCCUUGGGAUAUGUAAAUAUUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCGCCGUGAUUAGAUUGAUUGGGACUCAUUUGCAUGAUA ....((((...(((((((((((((..((...))....)))))))))))))...))))(..((((..((((................)))).))))..).. ( -23.29) >DroYak_CAF1 206346 100 - 1 CUUCCUCCUUGGGAUAUGUAAAUAUUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGUGAUUAGAUUGAUUGGGACUCAUUUGCAUGAUA ....((((...(((((((((((((..((...))....)))))))))))))...))))(..((((((.(((((.....))))).))......))))..).. ( -24.80) >DroAna_CAF1 193749 100 - 1 CUUCCUUCCUGGAAUAUGUAAAUAUUCGCCAUGUAAUUAUUUACAUAUUCUGUGGGGUUGUGCAUCCUGAUUAGAUUGAUUGAGACUCAUUUGCAUGAGA ...(((..(.((((((((((((((.(..(...)..).)))))))))))))))..)))(..((((((..((((.....))))..))......))))..).. ( -23.70) >consensus CUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGUGAUUAGAUUGAUUGGGACUCAUUUGCAUGAUA ....((((...(((((((((((((..((...))....)))))))))))))...))))(..((((((.(((((.....))))).))......))))..).. (-23.07 = -22.68 + -0.39)
Location | 13,179,126 – 13,179,220 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 92.62 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -18.10 |
Energy contribution | -17.55 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.17 |
Mean z-score | -2.14 |
Structure conservation index | 0.81 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13179126 94 - 27905053 UUUGCGAUACAUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGU ...(((((.((((((((....)))))....((((...(((((((((((((..((...))....)))))))))))))...))))..))).))))) ( -22.10) >DroSec_CAF1 206993 94 - 1 UUUGCGAUACAUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGU ...(((((.((((((((....)))))....((((...(((((((((((((..((...))....)))))))))))))...))))..))).))))) ( -22.10) >DroSim_CAF1 193043 94 - 1 UUUGCGAUACAUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGU ...(((((.((((((((....)))))....((((...(((((((((((((..((...))....)))))))))))))...))))..))).))))) ( -22.10) >DroEre_CAF1 197908 94 - 1 UUUGCGAUACGUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUAUUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCGCCGU ...(((.((((((...........)))...((((...(((((((((((((..((...))....)))))))))))))...))))..))))))... ( -22.90) >DroYak_CAF1 206378 94 - 1 UUUGCGAUACAUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUAUUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGU ...(((((.((((((((....)))))....((((...(((((((((((((..((...))....)))))))))))))...))))..))).))))) ( -22.80) >DroAna_CAF1 193781 94 - 1 UUUUCUAGGAAUUUCACAUGAUUUGACUUCCUUCCUGGAAUAUGUAAAUAUUCGCCAUGUAAUUAUUUACAUAUUCUGUGGGGUUGUGCAUCCU ......((((....((((...........(((..(.((((((((((((((.(..(...)..).)))))))))))))))..))).))))..)))) ( -22.40) >consensus UUUGCGAUACAUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGU .......................((((..((.((...(((((((((((((..((...))....)))))))))))))...))))..)).)).... (-18.10 = -17.55 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:59 2006