Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,882,406 – 1,882,513 |
Length | 107 |
Max. P | 0.816213 |
Location | 1,882,406 – 1,882,513 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.97 |
Mean single sequence MFE | -26.75 |
Consensus MFE | -17.91 |
Energy contribution | -19.13 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.35 |
Structure conservation index | 0.67 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.816213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1882406 107 + 27905053 CUCCUCGCCCUCGU------CCA------UUUCCGUAUCCGGCUCAUCGCUAGAUAUCUCCUCCUCGUCGGAUGACUCCGAGGAUAUAUCCUCUUCAGGCUCGCUCUCCAAGUGCUUAA .((((((...((((------((.------.....(((((..((.....))..)))))...(.....)..))))))...))))))............((((.(.........).)))).. ( -24.60) >DroPse_CAF1 31282 119 + 1 CUCUUCACCCUCGUCCUCGCCCAUAUCCUCUUCCGUAUCAGGUUCGUCGCUGGAUAUAGGUUCCUCCUCUGAUGACUCAGAGGAAACAUCUAUUUCCCCCUCGCUCAGAUCGUACUUGG ......................................(((((.((((((.(((.((((((...((((((((....))))))))...)))))).))).....))...)).)).))))). ( -26.40) >DroSec_CAF1 40390 107 + 1 CUCCUCGCCCUCGU------CCA------UUUCCGUAUCCGGCUCAUCGCUGGAUAUCUCCUCCUCGUCCGAUGACUCCGAGGAUAUAUCCUCUUCAGGCUCGCUUUCCAAGUGCUUAA ......(((.....------...------.....(((((((((.....))))))))).(((((...(((....)))...))))).............))).((((.....))))..... ( -26.10) >DroSim_CAF1 40998 107 + 1 CUCCUCGCCCUCGU------CCA------UUUCCGUAUCCGGCUCAUCGCUGGAUAUCUCCUCCUCGUCCGAUGACUCCGAGGAUAUAUCCUCUUCAGGCUCGCUUUCCAAGUGCUUAA ......(((.....------...------.....(((((((((.....))))))))).(((((...(((....)))...))))).............))).((((.....))))..... ( -26.10) >DroEre_CAF1 41205 110 + 1 CUCCUCGCCCUCGUCC---UCCA------UAUCCGUAUCCGGCUCAUCGCUGGAUAUAUCCUCCUCGUCAGAUGACUCCGAGGUCACAUCCUCAUCAGGCUCGCUCUCCAAAUGCUUAA ......(((.......---....------.....(((((((((.....))))))))).........(((....)))...((((......))))....)))..((.........)).... ( -25.60) >DroYak_CAF1 46382 110 + 1 CUCCUCGCCCUCGUCG---UCUA------UAUCCGUAUCCGGCUCAUCACUGGAUAUCUCCUCCUCGUCGGACGACUCCGAGGAUAUAUCCUCAUCGGGCUCGCUCUCUAAAUGCUUAA ......((((..((((---(((.------.....((((((((.......))))))))...(.....)..)))))))...(((((....)))))...))))..((.........)).... ( -31.70) >consensus CUCCUCGCCCUCGU______CCA______UUUCCGUAUCCGGCUCAUCGCUGGAUAUCUCCUCCUCGUCCGAUGACUCCGAGGAUAUAUCCUCUUCAGGCUCGCUCUCCAAGUGCUUAA ......(((.........................(((((((((.....)))))))))....((((((((....)))...))))).............)))................... (-17.91 = -19.13 + 1.22)
Location | 1,882,406 – 1,882,513 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.97 |
Mean single sequence MFE | -31.73 |
Consensus MFE | -23.05 |
Energy contribution | -24.00 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.22 |
Mean z-score | -1.25 |
Structure conservation index | 0.73 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1882406 107 - 27905053 UUAAGCACUUGGAGAGCGAGCCUGAAGAGGAUAUAUCCUCGGAGUCAUCCGACGAGGAGGAGAUAUCUAGCGAUGAGCCGGAUACGGAAA------UGG------ACGAGGGCGAGGAG ....((.(.....).))..((((...(.((((((.(((((...(((....)))...))))).))))))..(.((...(((....)))..)------).)------.)..))))...... ( -29.60) >DroPse_CAF1 31282 119 - 1 CCAAGUACGAUCUGAGCGAGGGGGAAAUAGAUGUUUCCUCUGAGUCAUCAGAGGAGGAACCUAUAUCCAGCGACGAACCUGAUACGGAAGAGGAUAUGGGCGAGGACGAGGGUGAAGAG ((..((.((.(((((((..(((((((((....)))))))))..))..))))).......(((((((((.....((....))...(....).)))))))))))...))..))........ ( -34.00) >DroSec_CAF1 40390 107 - 1 UUAAGCACUUGGAAAGCGAGCCUGAAGAGGAUAUAUCCUCGGAGUCAUCGGACGAGGAGGAGAUAUCCAGCGAUGAGCCGGAUACGGAAA------UGG------ACGAGGGCGAGGAG ....((.........))..((((...(.((((((.(((((...(((....)))...))))).))))))..(.((...(((....)))..)------).)------.)..))))...... ( -31.50) >DroSim_CAF1 40998 107 - 1 UUAAGCACUUGGAAAGCGAGCCUGAAGAGGAUAUAUCCUCGGAGUCAUCGGACGAGGAGGAGAUAUCCAGCGAUGAGCCGGAUACGGAAA------UGG------ACGAGGGCGAGGAG ....((.........))..((((...(.((((((.(((((...(((....)))...))))).))))))..(.((...(((....)))..)------).)------.)..))))...... ( -31.50) >DroEre_CAF1 41205 110 - 1 UUAAGCAUUUGGAGAGCGAGCCUGAUGAGGAUGUGACCUCGGAGUCAUCUGACGAGGAGGAUAUAUCCAGCGAUGAGCCGGAUACGGAUA------UGGA---GGACGAGGGCGAGGAG ....((.........))..((((..((.(((((((.((((...(((....)))...)))).)))))))..(.(((..(((....))).))------).).---...)).))))...... ( -30.20) >DroYak_CAF1 46382 110 - 1 UUAAGCAUUUAGAGAGCGAGCCCGAUGAGGAUAUAUCCUCGGAGUCGUCCGACGAGGAGGAGAUAUCCAGUGAUGAGCCGGAUACGGAUA------UAGA---CGACGAGGGCGAGGAG ....((.........))..((((.....((((((.(((((...(((....)))...))))).)))))).((......(((....)))...------...)---).....))))...... ( -33.60) >consensus UUAAGCACUUGGAGAGCGAGCCUGAAGAGGAUAUAUCCUCGGAGUCAUCCGACGAGGAGGAGAUAUCCAGCGAUGAGCCGGAUACGGAAA______UGG______ACGAGGGCGAGGAG ....((.........))..((((.....((((((.(((((...(((....)))...))))).)))))).........(((....)))......................))))...... (-23.05 = -24.00 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:41 2006