Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 307,750 – 307,870 |
Length | 120 |
Max. P | 0.996929 |
Location | 307,750 – 307,870 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.25 |
Mean single sequence MFE | -42.64 |
Consensus MFE | -39.12 |
Energy contribution | -39.88 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.08 |
Mean z-score | -1.92 |
Structure conservation index | 0.92 |
SVM decision value | 2.77 |
SVM RNA-class probability | 0.996929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 307750 120 + 27905053 UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCGAUCUUCAUCUGCAGCUUUAGCAAGCCCCUGGCGCUAGUGGACUUCCUGCAAGCGCAGGAGGCGCAUAGCGACAACGUGGCCACGU ((((((.((...(((((...((((((.....))))))...........((((....))))..)))))(((((((..((((((((....))))))))))).)))).....))))))))... ( -46.70) >DroSec_CAF1 44152 120 + 1 UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCGAUCUUCAUCUGCAACUUUAGCAAGCCCCUGGCACUGGUGGACUUCCUGCAGGCGCAGGAGGCGCAUAGCGACAACGUGGCCACGU ((((((.((((((((((...((((((.....)))))).......(((.......))).....)))))))).((((.((((((((....))))))))).)))........))))))))... ( -46.60) >DroSim_CAF1 44999 120 + 1 UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCGAUCUUCAUCUGCAACUUUAGCAAGCCCCUGGCACUGGUGGACUUCCUGCAGGCGCAGGAGGCGCAUAGCGACAACGUGGCCACGU ((((((.((((((((((...((((((.....)))))).......(((.......))).....)))))))).((((.((((((((....))))))))).)))........))))))))... ( -46.60) >DroEre_CAF1 47072 120 + 1 UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCGAUCUUCAUCUGCAGCUUCAGCAAACCCCUGGCCCUAGUAGACUUCCUGCAGGCGCAGGAGGCGCAUAGCGACAAUGUGGCCACCU (((((((((.(((((.....((((((.....)))))).....(((((((..((((.......))))..)).)))))..((((((....)))))))))))....))).....))))))... ( -40.40) >DroYak_CAF1 46888 120 + 1 UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCAAUCUUCAUCUGCAGCUUUAGCAAACCUCUUGCACUAGUGGACUUCCUUCAGGCGCAGGAGGCGCAUAGCGACAACGUUGCUACGU ......(((((((....))).))))...................(((.((....))...((((((((.((.(.((....))..).)).)))))))).)))(((((((...)))))))... ( -32.90) >consensus UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCGAUCUUCAUCUGCAGCUUUAGCAAGCCCCUGGCACUAGUGGACUUCCUGCAGGCGCAGGAGGCGCAUAGCGACAACGUGGCCACGU ((((((.((((((((((...((((((.....)))))).......(((.......))).....)))))))).(((..((((((((....)))))))))))..........))))))))... (-39.12 = -39.88 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:22 2006