Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 120,931 – 121,031 |
Length | 100 |
Max. P | 0.568918 |
Location | 120,931 – 121,031 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.30 |
Mean single sequence MFE | -21.77 |
Consensus MFE | -13.70 |
Energy contribution | -14.48 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.12 |
Mean z-score | -1.42 |
Structure conservation index | 0.63 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 120931 100 - 27905053 UCCCA------------AA---AACCCCGGACACUUACCUUAUCGCGAAUGUCUUGCCUCAUCUUCUCGCGCUCCUCCUCCAUUUUCCGGUGCUUUUCCUUUCGGCGGUCCUCGG ..((.------------..---.((((((((.............(((((((........)))....))))((.((.............)).)).......))))).)))....)) ( -17.52) >DroPse_CAF1 24399 103 - 1 ACUCC------------CACCCCAUCCCACAGACUCACCUUAUCGCGAAUGUCUUGCCUCAUCUUUUCGCGCUCUUCCUCCAUUUUCCGGUGCUUCUCCUUGCGCCGAUCCUCGG .....------------.........((...............((((((................))))))................((((((........))))))......)) ( -17.89) >DroGri_CAF1 31216 112 - 1 AGCAGAAGAGCAGAACAAA---ACAGAUUGCCGCUUACCUUAUCGCGUAUAUCCUGUCUCAUCUUUUCGCGCUCCUCCUCCAUUUUCCGGUGCUUCUCCUUGCGCCGGUCUUCGG (((.((((((..((.....---((((((...(((..........)))...)).)))).))..))))))..)))......((.....(((((((........))))))).....)) ( -26.10) >DroEre_CAF1 21818 100 - 1 CCUCC------------AA---AACCCCGGAUACUUACCUUAUCGCGAAUGUCUUGCCUCAUCUUCUCGCGCUCCUCCUCCAUUUUUCGGUGUUUUUCCUUGCGCCGGUCCUCGG .....------------..---..((..((((...........((((((((........)))....)))))................((((((........))))))))))..)) ( -19.70) >DroYak_CAF1 27667 100 - 1 CCGAC------------AA---AACGACGGAUACUUACCUUAUCGCGAAUGUCUUGCCUCAUCUUCUCGCGCUCCUCCUCCAUUUUUCGGUGCUUUUCCUUGCGCCGGUCCUCGG .....------------..---..(((.((((...........((((((((........)))....)))))................((((((........))))))))))))). ( -24.40) >DroAna_CAF1 20072 100 - 1 ACGAG------------CC---AUCAGCGAGCACUCACCUUGUCGCGAAUGUCUUGCCUCAUCUUCUCGCGUUCCUCCUCCAUUUUCCGGUGCUUCUCCUUGCGCCGCUCCUCGG .((((------------..---....(((((.........((..((((.....))))..))....))))).................((((((........))))))...)))). ( -25.02) >consensus ACCAC____________AA___AACCCCGGACACUUACCUUAUCGCGAAUGUCUUGCCUCAUCUUCUCGCGCUCCUCCUCCAUUUUCCGGUGCUUCUCCUUGCGCCGGUCCUCGG ...........................................((((((((........)))....)))))........((.....(((((((........))))))).....)) (-13.70 = -14.48 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:52 2006