Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,169,641 – 13,169,739 |
Length | 98 |
Max. P | 0.999511 |
Location | 13,169,641 – 13,169,739 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 89.16 |
Mean single sequence MFE | -30.12 |
Consensus MFE | -24.62 |
Energy contribution | -26.30 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.04 |
Mean z-score | -2.46 |
Structure conservation index | 0.82 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13169641 98 + 27905053 UGUGGCCUUGGAUUUUCUUUUU----GAAAACGCCUGGAAAAGGCCGAAAAACAUCCAAAACGACUGCACUGAUUGCAAACGAGGGAAUGUUCCCAUUGAAA .((.(..((((((((((.....----))))).((((.....)))).........)))))..).))((((.....))))..(((((((....)))).)))... ( -23.60) >DroSec_CAF1 199143 98 + 1 UGUGGCCUUGCAUUUUCUUUUU----GAAAAUGCCUGGAAAAGGCCGCAAAACAUCCAGAACGACUGCACUGAUUGCAAUCGAGGGAAUGUCCCCAUUGAAA (((((((((((((((((.....----))))))))......))))))))).......(((..(((.((((.....)))).))).(((......))).)))... ( -34.10) >DroSim_CAF1 184480 98 + 1 UGUGGCCUUGCUUUUUCUUUUU----GAAAAUGCCUGGAAAAGGCCGCAAAACAUCCAGAACGACUGCACUGAUUGCAAUCGAGGGAAUGUCCCCAUCGAAA (((((((((((.(((((.....----))))).))......))))))))).........((.(((.((((.....)))).))).(((......))).)).... ( -30.00) >DroEre_CAF1 190016 98 + 1 UGUGGCCUUGCACUUCCGUUUA----GAAAUUGGCAGGAAAAGGCCGCAAAACACCCAGAACGACUGCACUGAUUGCAAUCGAGGGAAUGUCCCCAUUGAAA (((((((((...((.(((....----.....))).))...))))))))).......(((..(((.((((.....)))).))).(((......))).)))... ( -30.80) >DroYak_CAF1 198043 102 + 1 UGUGGCCUUGCAUUUCCGUGAAAUGCGAAAAUGUGUAGAAAAGGCCGCAAAACAACCAGAACGACUGCACUGAUUGCAAUCGAGGGAAUGUCCCCAUUGAAA (((((((((((((((.(((.....))).))))))......)))))))))...(((......(((.((((.....)))).))).(((......))).)))... ( -32.10) >consensus UGUGGCCUUGCAUUUUCUUUUU____GAAAAUGCCUGGAAAAGGCCGCAAAACAUCCAGAACGACUGCACUGAUUGCAAUCGAGGGAAUGUCCCCAUUGAAA (((((((((((((((((.........))))))))......)))))))))............(((.((((.....)))).))).(((......)))....... (-24.62 = -26.30 + 1.68)
Location | 13,169,641 – 13,169,739 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 89.16 |
Mean single sequence MFE | -31.64 |
Consensus MFE | -28.02 |
Energy contribution | -28.78 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.13 |
Mean z-score | -2.73 |
Structure conservation index | 0.89 |
SVM decision value | 3.67 |
SVM RNA-class probability | 0.999511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13169641 98 - 27905053 UUUCAAUGGGAACAUUCCCUCGUUUGCAAUCAGUGCAGUCGUUUUGGAUGUUUUUCGGCCUUUUCCAGGCGUUUUC----AAAAAGAAAAUCCAAGGCCACA .......((((((((((...((.(((((.....))))).))....)))))))))).((((((.....((.((((((----.....))))))))))))))... ( -27.30) >DroSec_CAF1 199143 98 - 1 UUUCAAUGGGGACAUUCCCUCGAUUGCAAUCAGUGCAGUCGUUCUGGAUGUUUUGCGGCCUUUUCCAGGCAUUUUC----AAAAAGAAAAUGCAAGGCCACA ........(((((((((...((((((((.....))))))))....)))))))))(.((((((......((((((((----.....)))))))))))))).). ( -36.00) >DroSim_CAF1 184480 98 - 1 UUUCGAUGGGGACAUUCCCUCGAUUGCAAUCAGUGCAGUCGUUCUGGAUGUUUUGCGGCCUUUUCCAGGCAUUUUC----AAAAAGAAAAAGCAAGGCCACA ........(((((((((...((((((((.....))))))))....)))))))))(.((((((......((.(((((----.....))))).)))))))).). ( -31.70) >DroEre_CAF1 190016 98 - 1 UUUCAAUGGGGACAUUCCCUCGAUUGCAAUCAGUGCAGUCGUUCUGGGUGUUUUGCGGCCUUUUCCUGCCAAUUUC----UAAACGGAAGUGCAAGGCCACA ....((((....))))(((.((((((((.....))))))))....))).((((((((((........))).(((((----(....))))))))))))).... ( -32.70) >DroYak_CAF1 198043 102 - 1 UUUCAAUGGGGACAUUCCCUCGAUUGCAAUCAGUGCAGUCGUUCUGGUUGUUUUGCGGCCUUUUCUACACAUUUUCGCAUUUCACGGAAAUGCAAGGCCACA ...((((((((.....))))((((((((.....)))))))).....))))...((.((((((.......((((((((.......)))))))).)))))).)) ( -30.50) >consensus UUUCAAUGGGGACAUUCCCUCGAUUGCAAUCAGUGCAGUCGUUCUGGAUGUUUUGCGGCCUUUUCCAGGCAUUUUC____AAAAAGAAAAUGCAAGGCCACA ........(((((((((...((((((((.....))))))))....)))))))))..((((((......((((((((.........))))))))))))))... (-28.02 = -28.78 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:57 2006