Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,150,904 – 13,151,021 |
Length | 117 |
Max. P | 0.961400 |
Location | 13,150,904 – 13,151,021 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.03 |
Mean single sequence MFE | -22.66 |
Consensus MFE | -21.94 |
Energy contribution | -21.72 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.13 |
Mean z-score | -1.21 |
Structure conservation index | 0.97 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961400 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13150904 117 + 27905053 CCAUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGUAAUAUAUCUUCCU---CCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAAUGUCUGCCACGUUU ...(((((((...(((((...((((((......))))))))))))))))))..................---...((((...((((..(((........)))..)))).))))....... ( -21.50) >DroVir_CAF1 164888 120 + 1 UCAUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGCAAUAUAUCUUCCUUCUCCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAACGUCUGCCACGUUU ..((((((..((((...(((.((((((......)))))).))).....))))...))))))..............((((...((((..(((........)))..)))).))))....... ( -25.00) >DroGri_CAF1 165228 120 + 1 UCUUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGCAAUAUAUCUUCCUCCUACUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAACGUCUGCCACGUUU ..((((((((...(((((...((((((......)))))))))))))))))))..(((.................)))((((.((((..(((........)))..))))..))))...... ( -24.33) >DroWil_CAF1 165077 117 + 1 UCGUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGUAAUAUAUCUUCCU---CCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAAUGUCUGUUACGUUU ..((((((..((((...(((.((((((......)))))).))).....))))...))))))........---...((((...((((..(((........)))..)))).))))....... ( -19.80) >DroMoj_CAF1 181065 120 + 1 UCAUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGCAAUAUAUCUUCCUUCUCCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAACGUCUGCCACGUUU ..((((((..((((...(((.((((((......)))))).))).....))))...))))))..............((((...((((..(((........)))..)))).))))....... ( -25.00) >DroAna_CAF1 169047 117 + 1 CCUUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGUAAUAUAUCUUCCU---CCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAAUGUCGGCUACGUUU ..((((((((...(((((...((((((......))))))))))))))))))).................---...((.(...((((..(((........)))..)))).).))....... ( -20.30) >consensus UCAUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGCAAUAUAUCUUCCU___CCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAACGUCUGCCACGUUU ..((((((..((((...(((.((((((......)))))).))).....))))...))))))..............((((...((((..(((........)))..)))).))))....... (-21.94 = -21.72 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:49 2006