Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,150,246 – 13,150,337 |
Length | 91 |
Max. P | 0.942439 |
Location | 13,150,246 – 13,150,337 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.30 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -18.11 |
Energy contribution | -18.17 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.90 |
Structure conservation index | 0.66 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13150246 91 + 27905053 --------AAAUUCUGCGUGGCAUUUUUAAGCC-G-ACGCCAAAUGACAUGCAGCAGUUAUUAAUUGGCAAUUUACAUGCCGAAUGAUUAAUGCCUGGGC----------C--------- --------..(((..(((((((........)))-.-))))..)))..((.(((..((((((...((((((.......))))))))))))..))).))...----------.--------- ( -23.70) >DroPse_CAF1 171471 109 + 1 --------AAAUGCUGCGUAGCAUUUUUAAGCC-A-ACGCCAAAUGACAUGCAGCAGUUAUUAAUUGGCAAUUUACAUGCCAAAUGAUUAAUGCCCGGCC-GGGUCGGGCCGGAUCCGGA --------...((((((((..(((((....((.-.-..)).)))))..))))))))(((((((.((((((.......)))))).))).))))..((((((-......))))))....... ( -37.00) >DroGri_CAF1 164811 91 + 1 --------AAAU-UUGCGUAAUAUUUUGAAGCC-GAAUGCCAAAUGACAUGCAGCAGUUAUUAAUUGGCAAUUUACAUGCCAAAUGAUUAAUGCCUGGCC----------C--------- --------....-.................(((-(..(((..........)))(((...((((.((((((.......)))))).))))...))).)))).----------.--------- ( -18.10) >DroWil_CAF1 164558 109 + 1 GACGCUUAACAUUUUGCGUAGCAUUUUAAAGGCAA-ACGCCAAAUGACAUACAGCAGUUAUUAAUUGGCAAUUUACAUGCCAAAUGAUUAAUGCCUGUGCCUUGUGUGC-C--------- .((((..........)))).((((....((((((.-..((..((((((........))))))..((((((.......)))))).........))...))))))..))))-.--------- ( -28.90) >DroMoj_CAF1 180602 91 + 1 --------AAAU-UUGCGUAACAUUUUGAAGCC-GAAUGCCAAAUGACAUGCAGCAGUUAUUAAUUGGCAAUUUACAUGCCAAAUGAUUAAUGCCUCGCC----------C--------- --------....-.(((((..(((((....((.-....)).)))))..)))))(((...((((.((((((.......)))))).))))...)))......----------.--------- ( -19.10) >DroPer_CAF1 237948 109 + 1 --------AAAUGCUGCGUAGCAUUUUUAAGCC-A-ACGCCAAAUGACAUGCAGCAGUUAUUAAUUGGCAAUUUACAUGCCAAAUGAUUAAUGCCCGGCC-GGGUCGGGCCGGAUCCGGA --------...((((((((..(((((....((.-.-..)).)))))..))))))))(((((((.((((((.......)))))).))).))))..((((((-......))))))....... ( -37.00) >consensus ________AAAU_CUGCGUAGCAUUUUUAAGCC_A_ACGCCAAAUGACAUGCAGCAGUUAUUAAUUGGCAAUUUACAUGCCAAAUGAUUAAUGCCUGGCC__________C_________ ..............(((((..(((((....((......)).)))))..)))))(((...((((.((((((.......)))))).))))...))).......................... (-18.11 = -18.17 + 0.06)
Location | 13,150,246 – 13,150,337 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.30 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -18.01 |
Energy contribution | -17.93 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -2.47 |
Structure conservation index | 0.61 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13150246 91 - 27905053 ---------G----------GCCCAGGCAUUAAUCAUUCGGCAUGUAAAUUGCCAAUUAAUAACUGCUGCAUGUCAUUUGGCGU-C-GGCUUAAAAAUGCCACGCAGAAUUU-------- ---------.----------((...((((((........((((.......))))...........((((.(((((....)))))-)-))).....))))))..)).......-------- ( -25.20) >DroPse_CAF1 171471 109 - 1 UCCGGAUCCGGCCCGACCC-GGCCGGGCAUUAAUCAUUUGGCAUGUAAAUUGCCAAUUAAUAACUGCUGCAUGUCAUUUGGCGU-U-GGCUUAAAAAUGCUACGCAGCAUUU-------- ....(.(((((((......-)))))))).........((((((.......))))))........(((((((((((....)))))-(-(((........)))).))))))...-------- ( -37.10) >DroGri_CAF1 164811 91 - 1 ---------G----------GGCCAGGCAUUAAUCAUUUGGCAUGUAAAUUGCCAAUUAAUAACUGCUGCAUGUCAUUUGGCAUUC-GGCUUCAAAAUAUUACGCAA-AUUU-------- ---------(----------((((.((((........((((((.......))))))........))))(.(((((....))))).)-)))))...............-....-------- ( -21.69) >DroWil_CAF1 164558 109 - 1 ---------G-GCACACAAGGCACAGGCAUUAAUCAUUUGGCAUGUAAAUUGCCAAUUAAUAACUGCUGUAUGUCAUUUGGCGU-UUGCCUUUAAAAUGCUACGCAAAAUGUUAAGCGUC ---------(-(((...(((((((((..((((((....(((((.......)))))))))))..)))....(((((....)))))-.)))))).....))))((((..........)))). ( -27.90) >DroMoj_CAF1 180602 91 - 1 ---------G----------GGCGAGGCAUUAAUCAUUUGGCAUGUAAAUUGCCAAUUAAUAACUGCUGCAUGUCAUUUGGCAUUC-GGCUUCAAAAUGUUACGCAA-AUUU-------- ---------.----------.(((..(((((......((((((.......)))))).........((((.(((((....))))).)-))).....)))))..)))..-....-------- ( -27.40) >DroPer_CAF1 237948 109 - 1 UCCGGAUCCGGCCCGACCC-GGCCGGGCAUUAAUCAUUUGGCAUGUAAAUUGCCAAUUAAUAACUGCUGCAUGUCAUUUGGCGU-U-GGCUUAAAAAUGCUACGCAGCAUUU-------- ....(.(((((((......-)))))))).........((((((.......))))))........(((((((((((....)))))-(-(((........)))).))))))...-------- ( -37.10) >consensus _________G__________GGCCAGGCAUUAAUCAUUUGGCAUGUAAAUUGCCAAUUAAUAACUGCUGCAUGUCAUUUGGCGU_C_GGCUUAAAAAUGCUACGCAA_AUUU________ .........................((((((......((((((.......)))))).........(((..(((((....)))))...))).....))))))................... (-18.01 = -17.93 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:48 2006