| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,148,235 – 13,148,339 |
| Length | 104 |
| Max. P | 0.961149 |
| Location | 13,148,235 – 13,148,339 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 74.91 |
| Mean single sequence MFE | -16.76 |
| Consensus MFE | -1.91 |
| Energy contribution | -2.87 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.11 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.961149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13148235 104 + 27905053 UAUUUUUU------------UUCAAAUGCUAAUUCAUU-UUCUGGAACUUUCUUAAUUUUUUGGACCACAUUAUACCCUAUCCUCUCCAAAUUCACAGAAAAAAUCCGGAUGCCCAC ........------------..................-.((((((..(((((......((((((....................)))))).....)))))...))))))....... ( -13.25) >DroSec_CAF1 177522 104 + 1 UAUUUUUU------------UGAAAAUGAUAAUUCAUU-UUCUGAAACUUUCUUAAUUUUUUGGAGUACAUUAUACCCUAUCCUCUCCAAAGUCACAGAAAAAAUCCGGAUGCCCAC ....((((------------.((((((((....)))))-))).)))).(((((.....((((((((..................))))))))....)))))......((....)).. ( -19.37) >DroSim_CAF1 162855 103 + 1 U-UUUUUU------------UGCAGAUGCUAAUUCAUU-UUCUGGAACUUUCUUAAUUUUUUGGAGUACAUUAUACCCUAUCCUCUCCAAAGUCACAGAAAAAAUCCGGAUGCCCAC .-......------------.(((((.......))...-.((((((..(((((.....((((((((..................))))))))....)))))...))))))))).... ( -19.37) >DroEre_CAF1 168649 116 + 1 G-UUUUUUAAAUAACUCCCUGAAUGAUGCUAAUAUUUUUUCCUCAAACGUUCCCAAUGUGUUUGAGAACAUUAUACCCUAUCCUCUCCCGAUUCACAGAAAAAAUCAGGAUGCCCAC .-...............(((((............(((((((((((((((.........)))))))).................((....))......))))))))))))........ ( -14.30) >DroYak_CAF1 176193 109 + 1 G-AUUUUUCAGCAAUUCCUUUCCUGAUGCUAAUAUUUUGUCCUAAAAUGCUCCUAAUGUUUUUCAGAACAUUAUACCCUCUCCUCUCCAGAGUGACAGAAAAAAU-------CCCAC (-(((((((((.((.....)).))))........(((((((............((((((((....))))))))....((((.......)))).))))))))))))-------).... ( -17.50) >consensus U_UUUUUU____________UGCAGAUGCUAAUUCAUU_UUCUGAAACUUUCUUAAUUUUUUGGAGAACAUUAUACCCUAUCCUCUCCAAAGUCACAGAAAAAAUCCGGAUGCCCAC ...........................................................(((((((..................))))))).......................... ( -1.91 = -2.87 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:45 2006