Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,120,212 – 13,120,310 |
Length | 98 |
Max. P | 0.641704 |
Location | 13,120,212 – 13,120,310 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 78.76 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -20.65 |
Energy contribution | -21.82 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.27 |
Mean z-score | -1.50 |
Structure conservation index | 0.63 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641704 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13120212 98 - 27905053 UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAGCAGGGAAA--------------GGAAAUGCCGGGAAAGCUGGGAAA---ACCCGGUCGCCUGGGCCAAAUUAUGAA ((((..........((((.(((((..(((.....))).))))).)))--------------)......(((((...((((((...---.))))))..)))))))))......... ( -35.00) >DroSec_CAF1 150556 83 - 1 UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAG-----------------------------CCGGGAAAGCUGGGGAA---ACCCGGUCGCCUGGGUCAAAUUAUGAA ((((.....)))).(...(((((((((((.....)))..-----------------------------..(((...((((((...---.))))))..)))))).)))))...).. ( -29.90) >DroSim_CAF1 135310 98 - 1 UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAGCAGGGAAA--------------GGAAAGGCCGGGAAAGCUGGGAAA---ACCCGGUCGCCUGGGUCAAAUUAUGAA ((((..........((((.(((.((((((........))).))).))--------------).)))).(((((...((((((...---.))))))..)))))))))......... ( -33.00) >DroEre_CAF1 140544 106 - 1 UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAGCAGGGGG-CGAAAA-----GCCGGGAAAGCCGGGAAAGCUGGGAAA---AACCGGUCGCCUGGGUCGAAUUAUGAA .(((((((........))))((((((.(((((....))).)).)))-)))...-----)))..((...(((((...(((((....---..)))))..))))).)).......... ( -36.60) >DroYak_CAF1 148010 103 - 1 UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAGCAGGGAAACGAGAA--------CGAAAAGCCGGGAAAGCUGGGAA----AACCGGUCGCCUGGGUCGAAUUAUGGA ((((.....))))..(((((((.((.(((........))).)).)))))))..--------(((....(((((...(((((...----..)))))..))))).)))......... ( -32.00) >DroAna_CAF1 140114 108 - 1 UGGCACAAUGUCAACUUUGUUUGCGCUCUUUGUCAGCAAUUGAAUAA---GGGGGAAA---GGGUCUUUCUGGAA-ACUGGGCAACCGACCCUGUCGACUGGGUCAAAUUAUGAA ((((.(...(((.............(((((((((((...))).))))---))))((.(---(((((.....(...-.).((....)))))))).)))))..)))))......... ( -31.50) >consensus UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAGCAGGGAAA______________GGAAAAGCCGGGAAAGCUGGGAAA___ACCCGGUCGCCUGGGUCAAAUUAUGAA ((((..........(((((((.((..((...))..)))))))))........................(((((...((((((.......))))))..)))))))))......... (-20.65 = -21.82 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:38 2006