Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,117,996 – 13,118,099 |
Length | 103 |
Max. P | 0.545104 |
Location | 13,117,996 – 13,118,099 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -27.43 |
Consensus MFE | -13.23 |
Energy contribution | -15.03 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.07 |
Mean z-score | -2.58 |
Structure conservation index | 0.48 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13117996 103 + 27905053 --------------CAAAAAAUUAGGAGCUGAAUAUGUUUUAGUGGCGCUACAGUGCUGACAGUUCUGUAAAAUAUA--CGC-CGCGCUCAUAAUUUAUAUCAGUUUUGUUAACUCAACG --------------..........((((((((.((((..(((..((((((((((.((.....)).))))).......--...-.)))))..)))..))))))))))))............ ( -23.10) >DroVir_CAF1 134538 104 + 1 ------------AACAAAAAACUGAGAGCCAAAUAUGUUCUAGUGGCGCAACUGUGCUGACAGUUGUAUAAAAUAUA--CGC--GCUCUCAUAAUUUAUAUCAGUUUUCCUAACUGAACG ------------..........(((((((....((((((.((.....((((((((....)))))))).)).))))))--...--))))))).........((((((.....))))))... ( -27.00) >DroGri_CAF1 134488 107 + 1 -----AAGAAAAAGA----AGGCGAGAGCCAAAUAUGUUUUAGUGGCGCAACUGUGCUGACAGUUGUGAAAAAUAUA--CGC--GCUCUCAUAAUUUAUAUCAGUUUUGUUAACUGAACG -----..........----....((((((....((((((((.....(((((((((....))))))))).))))))))--...--))))))..........((((((.....))))))... ( -31.00) >DroWil_CAF1 135521 106 + 1 --------------CAAAAAAUUAGAAGCUGAAUAUGUUUUAGUGUCGCAACUGUGCUGACAGUUGUAUAAAAUAUAUACGCGCGCUCUCAUAAUUUAUAUCAGUUUUGUUAACUCAACG --------------..........((((((((.((((..((((((.(((((((((....))))))(((((.....)))))))))))).....))..))))))))))))............ ( -24.60) >DroMoj_CAF1 149178 116 + 1 AAGCAAAGAAGAAGAAGAAAACUGAGAGUCGAAUAUGUUUUAGUGGCGCAACUGUGCUGACAGUUGUGUAAAAUAUA--CGC--GCUCUCAUAAUUUAUAUCAGUUUUGUUAACUGAACG ......................((((((.((..((((((((....((((((((((....))))))))))))))))))--..)--))))))).........((((((.....))))))... ( -34.30) >DroPer_CAF1 204651 106 + 1 -----------CAGAAAAAAAUUAGAAGCUGAAUAUGUUUUAGUGGCGCAACUGCGCUGACAGUUGUGUAAAAUAUA--CGC-UACGCUCAUAAUUUAUAUCAGUUUUGUUAACUCAACG -----------.............((((((((.((((..((((((((((....))))).)).((.(((((.....))--)))-.)).....)))..))))))))))))............ ( -24.60) >consensus ____________AGAAAAAAAUUAAGAGCCGAAUAUGUUUUAGUGGCGCAACUGUGCUGACAGUUGUGUAAAAUAUA__CGC__GCUCUCAUAAUUUAUAUCAGUUUUGUUAACUCAACG ........................(((((....(((((((((....(((((((((....)))))))))))))))))).......))))).............((((.....))))..... (-13.23 = -15.03 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:35 2006