Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,107,247 – 13,107,340 |
Length | 93 |
Max. P | 0.970013 |
Location | 13,107,247 – 13,107,340 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 92.96 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -21.24 |
Energy contribution | -20.92 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.81 |
Structure conservation index | 0.86 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.970013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13107247 93 + 27905053 AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGUAGAGCUUGACUGCCUGGAGAAAUUCCAGGUGGGGGCAUUGGAAA---------GG .......(((..((.((((((.(((((................)))))..))....(..(((((((...)))))))..).)))).))..))---------). ( -25.49) >DroSec_CAF1 137800 93 + 1 AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGUAGAGCUCGACUGCCUGGAGAAAUUUCAGGUGGGGGCAUUGGAAA---------GG .......(((..((...((((.((((...............)))))))).((((..(..(((((((...)))))))..)))))..))..))---------). ( -22.66) >DroSim_CAF1 122550 93 + 1 AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGUAGAGCUUGACUGCCUGGAGAAAUUUCAGGUGGGGGCAUUGGAAA---------GG .......(((..((.((((((.(((((................)))))..))....(..(((((((...)))))))..).)))).))..))---------). ( -22.59) >DroEre_CAF1 127219 93 + 1 AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGCAGGGCUUGACUGCCUGGAGAUAUUUCAGGUGGGGGCAAUGGAAA---------GG .......(((..(((((((.(.(((((................))))).)......(..(((((((...)))))))..).)))))))..))---------). ( -27.29) >DroYak_CAF1 132198 101 + 1 AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGUAGGGCUUGACUGCCUGGAGAAAUUUCAGGUGG-GGCAAUGGAAAUGGGGAAAUGG .((((..((..((((((((.(.(((((................))))).)......(..(((((((...)))))))..)-))))))))....))..)))).. ( -25.89) >consensus AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGUAGAGCUUGACUGCCUGGAGAAAUUUCAGGUGGGGGCAUUGGAAA_________GG ..((((...((((....((((.((((...............)))))))).......(..(((((((...)))))))..).))))...))))........... (-21.24 = -20.92 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:28 2006