Locus 4979

Sequence ID 3R_DroMel_CAF1
Location 13,106,481 – 13,106,581
Length 100
Max. P 0.530364
window8142

overview

Window 2

Location 13,106,481 – 13,106,581
Length 100
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 95.04
Mean single sequence MFE -23.88
Consensus MFE -21.08
Energy contribution -21.28
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.18
Structure conservation index 0.88
SVM decision value -0.01
SVM RNA-class probability 0.530364
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13106481 100 + 27905053
UUCUGUGCUGGACGAAAGCAGAUUGCAAUAAAAGCGAUAACAGCGCGUGCGAGGAAAAACAGGAAUUAGUUGACAGAAGAG--GGCGCCUAGAAGUGGGCCA
((((((.((.((((...((..(((((.......)))))....)).))).).))....(((........))).))))))...--(((.((.......))))). ( -23.70)
>DroSec_CAF1 137073 100 + 1
UUCUGUGCUGGACUAAAGCAGAUUGCAAUAAAAGCGAUAACAGCGCGUGCGAGGAAAAACAGGAAUUAGAUGACAGAAGAG--GGCGCCUUGAAGUGGGCCA
(((((((((.......)))...(((((......(((.......))).)))))....................))))))...--(((.((.......))))). ( -22.80)
>DroSim_CAF1 121799 100 + 1
UUCUGUGCUGGACAAAAGCAGAUUGCAAUAAAAGCGAUAACAGCGCGUGCGAGGAAAAACAGGAAUUAGUUGACAGAAGAG--GGCGCCUAGAAGUGGGCCA
(((((((((.......)))...(((((......(((.......))).)))))....................))))))...--(((.((.......))))). ( -22.80)
>DroEre_CAF1 126469 99 + 1
UUCUGUGCUGGACGA-AGCAGAUUGCAAUAAAAGCGAUAACAGCGCGUGCGAAGAAAAACAGGAAUUAGAUGACAGAAGAG--GGCGCCUAGAAGUGGGCCA
(((((((((......-)))...(((((......(((.......))).)))))....................))))))...--(((.((.......))))). ( -23.30)
>DroYak_CAF1 131360 102 + 1
UUCUGUGCUGGACGAGAGCAGAUUGCAAUAAAAGCGAUAACUGCGCGUGCGAAGAAAAACAGGAAUUAGAUGACAGAAGAUGAGGCGCCUAGAAGUGGGCGA
((((((.(((.(((...(((((((((.......)))))..)))).))).)..))....)))))).....................((((((....)))))). ( -26.80)
>consensus
UUCUGUGCUGGACGAAAGCAGAUUGCAAUAAAAGCGAUAACAGCGCGUGCGAGGAAAAACAGGAAUUAGAUGACAGAAGAG__GGCGCCUAGAAGUGGGCCA
(((((((((.......)))...(((((......(((.......))).)))))....................)))))).....(((.((.......))))). (-21.08 = -21.28 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:27 2006