| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,105,685 – 13,105,776 |
| Length | 91 |
| Max. P | 0.885032 |
| Location | 13,105,685 – 13,105,776 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 78.05 |
| Mean single sequence MFE | -18.11 |
| Consensus MFE | -10.26 |
| Energy contribution | -10.45 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.885032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13105685 91 - 27905053 AACUUUU---GCGCACACGCAUGUGGC-----GCAGUGGAAAAUUUAUUAAACUAACUGCAAAUUAGUGCACAAUUGCACACACACACACACUCAACA--C--- ......(---(((....))))((((..-----(((((..................)))))......(((((....))))).)))).............--.--- ( -19.97) >DroVir_CAF1 123768 84 - 1 AACUUU----UUGCACACGCAUGUGGC-----GCAGUGUAAAAUUUAUUAAACUAACUGCAAAUUAGUGCAGAAUUACAUACACACACAGA-----GA------ ....((----((((((..((.....))-----(((((..................)))))......)))))))).................-----..------ ( -17.47) >DroWil_CAF1 125450 79 - 1 AACUUUUCCAGCACACACGCAUGUGGC-----GCAGUGCAAAAUUUAUUAAACUAACUGCAAAUUAGUGCACA----CACA------CACA-----UA--C--- ..........((((.(((....)))..-----(((((..................)))))......))))...----....------....-----..--.--- ( -14.57) >DroMoj_CAF1 138174 86 - 1 AACUUU----CUGCACACGCAUGUGGC-----GCACUGUCAAAUUUAUUAAACUAACUGCAAAUUAGUGCAGAAUUACACACACGCACACA-----CACA---- ....((----((((((..((.....))-----(((......................)))......)))))))).................-----....---- ( -14.35) >DroAna_CAF1 126475 80 - 1 AACUUUU---GCGCACACGCAUGUGGU-----GCAGUGGAAAAUUUAUUAAACUAACUGCAAAUUAGUGCACAAUUGCGCACUCA-----------CA--C--- ......(---(((((...((((....(-----(((((..................)))))).....)))).....))))))....-----------..--.--- ( -20.57) >DroPer_CAF1 194472 94 - 1 AACUUUU---CCGCACACGCAUGUGGCGCGGCGCAGUGAAAAAUUUAUUAAACCGACUGCAAAUUAGUGCACAAUUGCAGCCACACACACU-----CA--CAGG .......---((((....)).((((((((((((...(((........)))...)).)))).......((((....))))))))))......-----..--..)) ( -21.70) >consensus AACUUUU___GCGCACACGCAUGUGGC_____GCAGUGGAAAAUUUAUUAAACUAACUGCAAAUUAGUGCACAAUUGCACACACACACACA_____CA__C___ ............((((..((.....)).....(((((..................)))))......)))).................................. (-10.26 = -10.45 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:27 2006